Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0781
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13070-6|AAC46643.1|  470|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF100306-1|AAC68921.1|  423|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    29   4.5  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      29   4.5  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    28   5.9  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.9  
U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    28   7.8  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    28   7.8  

>U13070-6|AAC46643.1|  470|Caenorhabditis elegans Hypothetical
           protein F01F1.9 protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 645 FISDPKTATVLCSSASRIGVSASVGAPSSFLESVARSWVAASTRLTVFD 499
           F +DP+     C     +G  +++GA SSF E V R  ++A    T F+
Sbjct: 284 FKNDPQIRIAACFDNEEVGSDSAMGASSSFTEFVLRR-LSAGGSTTAFE 331


>AF100306-1|AAC68921.1|  423|Caenorhabditis elegans Hypothetical
           protein T24C4.2 protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -1

Query: 324 IILLQLTLNRRTKRVLQPGERMGGSTASRRTPAPRFPFIARGRQQSAPTRSDTD*SVQFP 145
           IIL Q+ LN  T  V  P    G   AS   P P  PF+     Q +P  S +    + P
Sbjct: 287 IILNQVKLNAMTNNVYNP---FGNWPASSLVPTPAPPFLTPTPSQVSPALSSSVDENEAP 343

Query: 144 PLPHLL 127
            + H L
Sbjct: 344 KIFHSL 349


>Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical
           protein ZK1151.1i protein.
          Length = 1497

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +2

Query: 335 GRAKTNRVASNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIR 490
           G A  N    NG GQ IH    ++   A   HG       YE  E   R+++
Sbjct: 227 GAAGGNGHVGNGGGQIIHHAHNQHLSNAQQAHGGFSESSSYETREHFERKVQ 278


>Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical
           protein ZK1151.1i protein.
          Length = 1497

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +2

Query: 335 GRAKTNRVASNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIR 490
           G A  N    NG GQ IH    ++   A   HG       YE  E   R+++
Sbjct: 227 GAAGGNGHVGNGGGQIIHHAHNQHLSNAQQAHGGFSESSSYETREHFERKVQ 278


>U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical
           protein R08E3.4a protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 NAGTACGYSVHFHSK-RHDLSSHVHEKP*YCCS*H*TDAQSE-SCSQANEWADRRRLVVR 231
           NA T CG++    S+ +  +  H +E        H   +  E S SQ  EW D       
Sbjct: 5   NACTECGFTTTVFSEFQGHIEKHENE--------HSRSSSGEMSNSQTIEWGD------- 49

Query: 230 LPQGSPSSLEADNSLPPRDPTPTKASNSRL 141
              G  SS  +  S PP DPTP+  S+  L
Sbjct: 50  ---GIQSSTPSPRSTPPSDPTPSPDSDEHL 76


>U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical
           protein R08E3.4b protein.
          Length = 480

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = -2

Query: 404 NAGTACGYSVHFHSK-RHDLSSHVHEKP*YCCS*H*TDAQSE-SCSQANEWADRRRLVVR 231
           NA T CG++    S+ +  +  H +E        H   +  E S SQ  EW D       
Sbjct: 5   NACTECGFTTTVFSEFQGHIEKHENE--------HSRSSSGEMSNSQTIEWGD------- 49

Query: 230 LPQGSPSSLEADNSLPPRDPTPTKASNSRL 141
              G  SS  +  S PP DPTP+  S+  L
Sbjct: 50  ---GIQSSTPSPRSTPPSDPTPSPDSDEHL 76


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 382 TLSISIRSDTICLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPL 212
           T + ++ S T    T T +    +  T  TH  +PA+   +   DG +    PKVP+
Sbjct: 547 TSTTTLPSTTASTTTKTTTSTPTSPQTTTTHVGAPASSVASVAHDGSTLAGKPKVPV 603


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 382 TLSISIRSDTICLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPL 212
           T + ++ S T    T T +    +  T  TH  +PA+   +   DG +    PKVP+
Sbjct: 388 TSTTTLPSTTASTTTKTTTSTPTSPQTTTTHVGAPASSVASVAHDGSTLAGKPKVPV 444


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 382 TLSISIRSDTICLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPL 212
           T + ++ S T    T T +    +  T  TH  +PA+   +   DG +    PKVP+
Sbjct: 428 TSTTTLPSTTASTTTKTTTSTPTSPQTTTTHVGAPASSVASVAHDGSTLAGKPKVPV 484


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -3

Query: 349 CLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPLHR*RQTTVCPHEIR 170
           C  T+T +   V  D K    A     R  G     SSY+CP V   R    T+   +  
Sbjct: 78  CYTTATATPAAVVQDMKTA--AQSTCPRACGLCCQTSSYSCPNVAFPRLNCATITQSQCF 135

Query: 169 HRLKRPIPA 143
             + RPI A
Sbjct: 136 SLVWRPIIA 144


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 245 RLVVRLPQGSPSSLEADNSLPPRDPTPTKASNSRLFLIFFPTLGGPEACTALPI--TNTD 72
           R V + P  +  +  A  + PP  PTP+++S +       PT   P+ C A P+   +T 
Sbjct: 30  RSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTC-APPVRSASTV 88

Query: 71  ATVNASAP 48
           A   A+AP
Sbjct: 89  AAAAAAAP 96


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 245 RLVVRLPQGSPSSLEADNSLPPRDPTPTKASNSRLFLIFFPTLGGPEACTALPI--TNTD 72
           R V + P  +  +  A  + PP  PTP+++S +       PT   P+ C A P+   +T 
Sbjct: 159 RSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTC-APPVRSASTV 217

Query: 71  ATVNASAP 48
           A   A+AP
Sbjct: 218 AAAAAAAP 225


>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 299 FSVSCNSIMAFRGRAKTNRVASNGNGQSIH 388
           F+++ NS+   R R K +   SNGNG+  H
Sbjct: 891 FALNMNSLSDHRSRQKMSTCNSNGNGKPNH 920


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = +3

Query: 348 QIVSLRMEMDRVSTSSASVTDALQICHT-------AAKELRGNTSVLSHKLAELEEQHQI 506
           ++ ++RM+MDR     A     L  C T        A E+RG+  +L  +L   E+ + +
Sbjct: 336 EMATMRMKMDRSEVELAEKKQELFGCQTRMQTAEETANEMRGHLQLLKDQLTNREQHNTL 395

Query: 507 L 509
           L
Sbjct: 396 L 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,302
Number of Sequences: 27780
Number of extensions: 363356
Number of successful extensions: 1480
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)