BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0781 (732 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U13070-6|AAC46643.1| 470|Caenorhabditis elegans Hypothetical pr... 30 1.5 AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 30 1.5 Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical pr... 29 3.4 Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical pr... 29 3.4 U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical pr... 29 3.4 U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical pr... 29 3.4 Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 4.5 Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 4.5 X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 29 4.5 Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 28 5.9 AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 5.9 AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 5.9 U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 28 7.8 AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 28 7.8 >U13070-6|AAC46643.1| 470|Caenorhabditis elegans Hypothetical protein F01F1.9 protein. Length = 470 Score = 30.3 bits (65), Expect = 1.5 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -1 Query: 645 FISDPKTATVLCSSASRIGVSASVGAPSSFLESVARSWVAASTRLTVFD 499 F +DP+ C +G +++GA SSF E V R ++A T F+ Sbjct: 284 FKNDPQIRIAACFDNEEVGSDSAMGASSSFTEFVLRR-LSAGGSTTAFE 331 >AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical protein T24C4.2 protein. Length = 423 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/66 (33%), Positives = 28/66 (42%) Frame = -1 Query: 324 IILLQLTLNRRTKRVLQPGERMGGSTASRRTPAPRFPFIARGRQQSAPTRSDTD*SVQFP 145 IIL Q+ LN T V P G AS P P PF+ Q +P S + + P Sbjct: 287 IILNQVKLNAMTNNVYNP---FGNWPASSLVPTPAPPFLTPTPSQVSPALSSSVDENEAP 343 Query: 144 PLPHLL 127 + H L Sbjct: 344 KIFHSL 349 >Z93398-9|CAN99698.1| 1497|Caenorhabditis elegans Hypothetical protein ZK1151.1i protein. Length = 1497 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/52 (30%), Positives = 21/52 (40%) Frame = +2 Query: 335 GRAKTNRVASNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIR 490 G A N NG GQ IH ++ A HG YE E R+++ Sbjct: 227 GAAGGNGHVGNGGGQIIHHAHNQHLSNAQQAHGGFSESSSYETREHFERKVQ 278 >Z92788-9|CAN99699.1| 1497|Caenorhabditis elegans Hypothetical protein ZK1151.1i protein. Length = 1497 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/52 (30%), Positives = 21/52 (40%) Frame = +2 Query: 335 GRAKTNRVASNGNGQSIHKQCQRYRRPADMPHGSERIERQYERAESQTRRIR 490 G A N NG GQ IH ++ A HG YE E R+++ Sbjct: 227 GAAGGNGHVGNGGGQIIHHAHNQHLSNAQQAHGGFSESSSYETREHFERKVQ 278 >U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical protein R08E3.4a protein. Length = 447 Score = 29.1 bits (62), Expect = 3.4 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -2 Query: 404 NAGTACGYSVHFHSK-RHDLSSHVHEKP*YCCS*H*TDAQSE-SCSQANEWADRRRLVVR 231 NA T CG++ S+ + + H +E H + E S SQ EW D Sbjct: 5 NACTECGFTTTVFSEFQGHIEKHENE--------HSRSSSGEMSNSQTIEWGD------- 49 Query: 230 LPQGSPSSLEADNSLPPRDPTPTKASNSRL 141 G SS + S PP DPTP+ S+ L Sbjct: 50 ---GIQSSTPSPRSTPPSDPTPSPDSDEHL 76 >U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical protein R08E3.4b protein. Length = 480 Score = 29.1 bits (62), Expect = 3.4 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -2 Query: 404 NAGTACGYSVHFHSK-RHDLSSHVHEKP*YCCS*H*TDAQSE-SCSQANEWADRRRLVVR 231 NA T CG++ S+ + + H +E H + E S SQ EW D Sbjct: 5 NACTECGFTTTVFSEFQGHIEKHENE--------HSRSSSGEMSNSQTIEWGD------- 49 Query: 230 LPQGSPSSLEADNSLPPRDPTPTKASNSRL 141 G SS + S PP DPTP+ S+ L Sbjct: 50 ---GIQSSTPSPRSTPPSDPTPSPDSDEHL 76 >Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical protein C29E6.1a protein. Length = 812 Score = 28.7 bits (61), Expect = 4.5 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = -3 Query: 382 TLSISIRSDTICLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPL 212 T + ++ S T T T + + T TH +PA+ + DG + PKVP+ Sbjct: 547 TSTTTLPSTTASTTTKTTTSTPTSPQTTTTHVGAPASSVASVAHDGSTLAGKPKVPV 603 >Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical protein C29E6.1b protein. Length = 653 Score = 28.7 bits (61), Expect = 4.5 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = -3 Query: 382 TLSISIRSDTICLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPL 212 T + ++ S T T T + + T TH +PA+ + DG + PKVP+ Sbjct: 388 TSTTTLPSTTASTTTKTTTSTPTSPQTTTTHVGAPASSVASVAHDGSTLAGKPKVPV 444 >X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. Length = 693 Score = 28.7 bits (61), Expect = 4.5 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = -3 Query: 382 TLSISIRSDTICLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPL 212 T + ++ S T T T + + T TH +PA+ + DG + PKVP+ Sbjct: 428 TSTTTLPSTTASTTTKTTTSTPTSPQTTTTHVGAPASSVASVAHDGSTLAGKPKVPV 484 >Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical protein T06C12.14 protein. Length = 245 Score = 28.3 bits (60), Expect = 5.9 Identities = 21/69 (30%), Positives = 27/69 (39%) Frame = -3 Query: 349 CLRTSTKSHNTVAADTKQTHKASPAARRTNGRIDGVSSYACPKVPLHR*RQTTVCPHEIR 170 C T+T + V D K A R G SSY+CP V R T+ + Sbjct: 78 CYTTATATPAAVVQDMKTA--AQSTCPRACGLCCQTSSYSCPNVAFPRLNCATITQSQCF 135 Query: 169 HRLKRPIPA 143 + RPI A Sbjct: 136 SLVWRPIIA 144 >AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical protein Y59A8B.9 protein. Length = 187 Score = 28.3 bits (60), Expect = 5.9 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -2 Query: 245 RLVVRLPQGSPSSLEADNSLPPRDPTPTKASNSRLFLIFFPTLGGPEACTALPI--TNTD 72 R V + P + + A + PP PTP+++S + PT P+ C A P+ +T Sbjct: 30 RSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTC-APPVRSASTV 88 Query: 71 ATVNASAP 48 A A+AP Sbjct: 89 AAAAAAAP 96 >AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical protein Y59A8B.7 protein. Length = 316 Score = 28.3 bits (60), Expect = 5.9 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -2 Query: 245 RLVVRLPQGSPSSLEADNSLPPRDPTPTKASNSRLFLIFFPTLGGPEACTALPI--TNTD 72 R V + P + + A + PP PTP+++S + PT P+ C A P+ +T Sbjct: 159 RSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTC-APPVRSASTV 217 Query: 71 ATVNASAP 48 A A+AP Sbjct: 218 AAAAAAAP 225 >U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor family (ampa)protein 5 protein. Length = 932 Score = 27.9 bits (59), Expect = 7.8 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 299 FSVSCNSIMAFRGRAKTNRVASNGNGQSIH 388 F+++ NS+ R R K + SNGNG+ H Sbjct: 891 FALNMNSLSDHRSRQKMSTCNSNGNGKPNH 920 >AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian elks/cast/erc/rab6 interactingprotein homolog protein 1 protein. Length = 836 Score = 27.9 bits (59), Expect = 7.8 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Frame = +3 Query: 348 QIVSLRMEMDRVSTSSASVTDALQICHT-------AAKELRGNTSVLSHKLAELEEQHQI 506 ++ ++RM+MDR A L C T A E+RG+ +L +L E+ + + Sbjct: 336 EMATMRMKMDRSEVELAEKKQELFGCQTRMQTAEETANEMRGHLQLLKDQLTNREQHNTL 395 Query: 507 L 509 L Sbjct: 396 L 396 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,713,302 Number of Sequences: 27780 Number of extensions: 363356 Number of successful extensions: 1480 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1349 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1480 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1714401074 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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