Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0781
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.0  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 31  VQIISCGADAFTVASVLVMGS 93
           + +IS GADA+   + +V+G+
Sbjct: 320 IVVISAGADAYPPLAAIVLGA 340


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 273 PGERMGGSTASRRTPAPRFP 214
           PG   G + + +  P PRFP
Sbjct: 62  PGHHYGAAGSQQDMPYPRFP 81



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 365 NGNGQSIHKQCQRYRRPADMPHGSERIERQYERA 466
           NG  +  H+  Q Y     +P  ++ +++Q ++A
Sbjct: 15  NGGVEHPHQHQQHYGAAVQVPQQTQSVQQQSQQA 48


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 222 LGQAYDETPSIRPF 263
           L +  DE PS+RPF
Sbjct: 870 LVEVLDEFPSVRPF 883


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 399 SVTDALQICHTA 434
           S+T ALQ CH A
Sbjct: 163 SITCALQFCHNA 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,123
Number of Sequences: 438
Number of extensions: 4416
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)