Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0780
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   0.75 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   1.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   1.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   1.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   9.2  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   9.2  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   9.2  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   9.2  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   9.2  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   9.2  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   9.2  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   9.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 301 FGEVISXAFSYRARFTRLAVAG 236
           F  + S  F Y  R+T+L VAG
Sbjct: 226 FHRLTSNTFDYDPRYTKLTVAG 247



 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 6/28 (21%)
 Frame = -2

Query: 349 HPQYNKN*ILHEGS------RLFGEVIS 284
           +PQY +N + +EGS      + FG+V+S
Sbjct: 288 NPQYEENNVQYEGSQDILNTQSFGKVVS 315


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 325 ILHEGSRLFGEVISXAFSYRARFTRLAVAG 236
           + H     F  + S  F Y  +FT++ + G
Sbjct: 215 VYHNSDDSFHRLTSNTFDYDPKFTKMTIDG 244


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 325 ILHEGSRLFGEVISXAFSYRARFTRLAVAG 236
           + H     F  + S  F Y  +FT++ + G
Sbjct: 215 VYHNSDDSFHRLTSNTFDYDPKFTKMTIDG 244


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 325 ILHEGSRLFGEVISXAFSYRARFTRLAVAG 236
           + H     F  + S  F Y  +FT++ + G
Sbjct: 215 VYHNSDDSFHRLTSNTFDYDPKFTKMTIDG 244


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 96  NYNNNNNYNNYKKLYYNIN 114


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 99  NLLRGERFCSFKKLYFNIH 43
           N      + ++KKLY+NI+
Sbjct: 94  NNYNNNNYNNYKKLYYNIN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,649
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)