Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0779
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 102 2e-22
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 92 3e-19
08_02_0707 - 20212190-20214592 30 1.2
09_06_0222 - 21655236-21655841 28 3.5
02_05_1214 + 34976814-34979813 28 3.5
03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689 28 4.7
12_02_0357 + 17941898-17943691 27 6.2
02_01_0441 - 3191522-3191887,3193787-3193957 27 6.2
07_03_1233 + 25057139-25057262,25058340-25058911 27 8.2
04_04_0162 - 23210732-23211739 27 8.2
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 102 bits (244), Expect = 2e-22
Identities = 49/68 (72%), Positives = 56/68 (82%)
Frame = +2
Query: 23 RKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD 202
RKC ++TK+LYLLNQGE T EAT++FFA TKLFQSKD LRRLVYL IKELSP + +
Sbjct: 43 RKCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDE 102
Query: 203 VIIVTSSL 226
VIIVTSSL
Sbjct: 103 VIIVTSSL 110
Score = 60.9 bits (141), Expect = 5e-10
Identities = 33/79 (41%), Positives = 40/79 (50%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIR LC I D T+L IERY+KQAIVDKNP P +V+ N
Sbjct: 121 YRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVKRWSN 180
Query: 436 EAHEAMTSDHVMGSYQALA 492
E EA+ S + + LA
Sbjct: 181 EVQEAVQSRFALVQFHGLA 199
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 91.9 bits (218), Expect = 3e-19
Identities = 43/68 (63%), Positives = 52/68 (76%)
Frame = +2
Query: 23 RKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD 202
R+C ++TK+LYLLNQG+ T EAT++FFATTKLFQSKD LRR+VYL IKELSP A +
Sbjct: 45 RRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADE 104
Query: 203 VIIVTSSL 226
V SL
Sbjct: 105 FSAVYGSL 112
Score = 63.3 bits (147), Expect = 1e-10
Identities = 35/79 (44%), Positives = 42/79 (53%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIR LC I DST+L IERY+KQAIVDKNP P +V+ N
Sbjct: 140 YRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRWSN 199
Query: 436 EAHEAMTSDHVMGSYQALA 492
E EA+ S + + ALA
Sbjct: 200 EVQEAVQSRAALVQFHALA 218
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 390 QSGDQCGRSYCGILINNSLFHVPLNSLQHCTVCDATQSSNGG 265
QSGD + I + ++ +PLNS+ T C S NGG
Sbjct: 599 QSGDHAHQDISNISSDPAILEIPLNSIH--THCSEAHSCNGG 638
>09_06_0222 - 21655236-21655841
Length = 201
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 321 LNSLQHCTVCDATQSSNGGRSVPSSLPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTT 142
L S +H T AT +++GGR V + + V C +GL +L+ R ++ N +
Sbjct: 5 LQSSEHLTAATATAAASGGRGVHTD---TFLILAAVLCFLLCVVGL-ALVARCSRLCNPS 60
Query: 141 SF 136
SF
Sbjct: 61 SF 62
>02_05_1214 + 34976814-34979813
Length = 999
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 407 TVADRCKAETSAADPTAGFLSTIACFMYLSIACSIVLSVMLHKARMAAGRYHRLYPSCPS 228
T +R +A S DP A L +IAC + IA +I + V++ + A R R PS
Sbjct: 923 TQGERMQALLSWRDPRATVLFSIACVLAAVIAYTIPMKVLVGLWGLYAMRPPRFRSRMPS 982
>03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689
Length = 328
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 490 PRLGKNPSHDLKSWPRVLHLPRDALNPVRWLTDAKRR 380
P K+ S L S R L LP ++ RW T A+RR
Sbjct: 5 PSSTKDKSPSLPSHRRPLFLPSTSIASSRWATAARRR 41
>12_02_0357 + 17941898-17943691
Length = 597
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 335 CFMYLSIACSIVLSVMLHKARMAAGRYHRLY 243
CF+Y+SIA + L VM+ + G H Y
Sbjct: 228 CFLYISIALAAYLLVMIVVQKQVRGFSHAAY 258
>02_01_0441 - 3191522-3191887,3193787-3193957
Length = 178
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 312 LQHCTVCDATQSSNGGRSVPSSLPVMSFVSEEVTMI 205
L C + ++ ++ + VP S PVM S+EV ++
Sbjct: 99 LAQCAIAESQSTNTNPQQVPGSDPVMMLDSDEVCIL 134
>07_03_1233 + 25057139-25057262,25058340-25058911
Length = 231
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 181 VESYGTRCDHCDFFTYE 231
V G RCDHCDF +E
Sbjct: 88 VAGAGYRCDHCDFDIHE 104
>04_04_0162 - 23210732-23211739
Length = 335
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 399 SHRTGFSASLGK*STRGHDFRSCDGFLPSL 488
+H GFS G+ + R + FRS DG+ PSL
Sbjct: 202 AHTVGFS-HCGEFAHRLYSFRSADGYDPSL 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,611
Number of Sequences: 37544
Number of extensions: 266767
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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