Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0779
(493 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein comple... 113 2e-25
AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop ... 113 2e-25
AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein. 113 2e-25
BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein. 110 3e-24
BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein. 110 3e-24
AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP... 110 3e-24
AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protei... 110 3e-24
AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein. 110 3e-24
AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens ... 73 7e-13
BC104911-1|AAI04912.1| 620|Homo sapiens GLIS family zinc finger... 31 2.9
BC101799-1|AAI01800.1| 620|Homo sapiens GLIS family zinc finger... 31 2.9
AL591720-1|CAH72026.1| 620|Homo sapiens GLIS family zinc finger... 31 2.9
AK090634-1|BAC03494.1| 620|Homo sapiens protein ( Homo sapiens ... 31 2.9
>BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein complex,
subunit gamma protein.
Length = 874
Score = 113 bits (273), Expect = 2e-25
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PRKC HILTKILYL+NQGE L T EAT+ FFA TKLFQS D LRR+ YL IKE
Sbjct: 35 NETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKE 94
Query: 182 LSPMAQDVIIVTSSL 226
+S +A+DVIIVTSSL
Sbjct: 95 MSCIAEDVIIVTSSL 109
Score = 77.4 bits (182), Expect = 3e-14
Identities = 42/78 (53%), Positives = 48/78 (61%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR A+RALC ITDSTMLQAIERYMKQAIVDK P +V+ VN
Sbjct: 120 YRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN 179
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 180 EAQEAASSDNIMVQYHAL 197
>AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop
protein.
Length = 874
Score = 113 bits (273), Expect = 2e-25
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PRKC HILTKILYL+NQGE L T EAT+ FFA TKLFQS D LRR+ YL IKE
Sbjct: 35 NETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKE 94
Query: 182 LSPMAQDVIIVTSSL 226
+S +A+DVIIVTSSL
Sbjct: 95 MSCIAEDVIIVTSSL 109
Score = 77.4 bits (182), Expect = 3e-14
Identities = 42/78 (53%), Positives = 48/78 (61%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR A+RALC ITDSTMLQAIERYMKQAIVDK P +V+ VN
Sbjct: 120 YRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN 179
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 180 EAQEAASSDNIMVQYHAL 197
>AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein.
Length = 874
Score = 113 bits (273), Expect = 2e-25
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PRKC HILTKILYL+NQGE L T EAT+ FFA TKLFQS D LRR+ YL IKE
Sbjct: 35 NETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKE 94
Query: 182 LSPMAQDVIIVTSSL 226
+S +A+DVIIVTSSL
Sbjct: 95 MSCIAEDVIIVTSSL 109
Score = 77.4 bits (182), Expect = 3e-14
Identities = 42/78 (53%), Positives = 48/78 (61%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR A+RALC ITDSTMLQAIERYMKQAIVDK P +V+ VN
Sbjct: 120 YRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN 179
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 180 EAQEAASSDNIMVQYHAL 197
>BC110796-1|AAI10797.1| 726|Homo sapiens COPG2 protein protein.
Length = 726
Score = 110 bits (264), Expect = 3e-24
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PR+C+HILTKILYLLNQGE T EAT+ FFA T+LFQS D LRR+ YL IKE
Sbjct: 35 NETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKE 94
Query: 182 LSPMAQDVIIVTSSL 226
++ +++DVIIVTSSL
Sbjct: 95 MATISEDVIIVTSSL 109
Score = 72.5 bits (170), Expect = 7e-13
Identities = 40/78 (51%), Positives = 46/78 (58%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIRALC ITD TMLQAIERYMKQAIVDK +V+ +N
Sbjct: 120 YRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWIN 179
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 180 EAQEAASSDNIMVQYHAL 197
>BC017443-1|AAH17443.2| 865|Homo sapiens COPG2 protein protein.
Length = 865
Score = 110 bits (264), Expect = 3e-24
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PR+C+HILTKILYLLNQGE T EAT+ FFA T+LFQS D LRR+ YL IKE
Sbjct: 29 NETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKE 88
Query: 182 LSPMAQDVIIVTSSL 226
++ +++DVIIVTSSL
Sbjct: 89 MATISEDVIIVTSSL 103
Score = 72.5 bits (170), Expect = 7e-13
Identities = 40/78 (51%), Positives = 46/78 (58%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIRALC ITD TMLQAIERYMKQAIVDK +V+ +N
Sbjct: 114 YRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWIN 173
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 174 EAQEAASSDNIMVQYHAL 191
>AF207598-1|AAF19433.1| 871|Homo sapiens coat protein gamma2-COP
protein.
Length = 871
Score = 110 bits (264), Expect = 3e-24
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PR+C+HILTKILYLLNQGE T EAT+ FFA T+LFQS D LRR+ YL IKE
Sbjct: 35 NETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKE 94
Query: 182 LSPMAQDVIIVTSSL 226
++ +++DVIIVTSSL
Sbjct: 95 MATISEDVIIVTSSL 109
Score = 72.5 bits (170), Expect = 7e-13
Identities = 40/78 (51%), Positives = 46/78 (58%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIRALC ITD TMLQAIERYMKQAIVDK +V+ +N
Sbjct: 120 YRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWIN 179
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 180 EAQEAASSDNIMVQYHAL 197
>AF157833-1|AAF14271.1| 871|Homo sapiens nonclathrin coat protein
gamma2-COP protein.
Length = 871
Score = 110 bits (264), Expect = 3e-24
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PR+C+HILTKILYLLNQGE T EAT+ FFA T+LFQS D LRR+ YL IKE
Sbjct: 35 NETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKE 94
Query: 182 LSPMAQDVIIVTSSL 226
++ +++DVIIVTSSL
Sbjct: 95 MATISEDVIIVTSSL 109
Score = 72.5 bits (170), Expect = 7e-13
Identities = 40/78 (51%), Positives = 46/78 (58%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIRALC ITD TMLQAIERYMKQAIVDK +V+ +N
Sbjct: 120 YRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWIN 179
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 180 EAQEAASSDNIMVQYHAL 197
>AB047847-1|BAB17658.1| 871|Homo sapiens gamma2-COP protein.
Length = 871
Score = 110 bits (264), Expect = 3e-24
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = +2
Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
N TP++PR+C+HILTKILYLLNQGE T EAT+ FFA T+LFQS D LRR+ YL IKE
Sbjct: 35 NETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKE 94
Query: 182 LSPMAQDVIIVTSSL 226
++ +++DVIIVTSSL
Sbjct: 95 MATISEDVIIVTSSL 109
Score = 72.5 bits (170), Expect = 7e-13
Identities = 40/78 (51%), Positives = 46/78 (58%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIRALC ITD TMLQAIERYMKQAIVDK +V+ +N
Sbjct: 120 YRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWIN 179
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 180 EAQEAASSDNIMVQYHAL 197
>AK022934-1|BAB14315.1| 799|Homo sapiens protein ( Homo sapiens
cDNA FLJ12872 fis, clone NT2RP2003760, highly similar to
COATOMER GAMMA SUBUNIT. ).
Length = 799
Score = 72.5 bits (170), Expect = 7e-13
Identities = 40/78 (51%), Positives = 46/78 (58%)
Frame = +1
Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
YR AIRALC ITD TMLQAIERYMKQAIVDK +V+ +N
Sbjct: 48 YRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWIN 107
Query: 436 EAHEAMTSDHVMGSYQAL 489
EA EA +SD++M Y AL
Sbjct: 108 EAQEAASSDNIMVQYHAL 125
Score = 50.0 bits (114), Expect = 4e-06
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +2
Query: 119 TKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSL 226
T+LFQS D LRR+ YL IKE++ +++DVIIVTSSL
Sbjct: 2 TRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSL 37
>BC104911-1|AAI04912.1| 620|Homo sapiens GLIS family zinc finger 1
protein.
Length = 620
Score = 30.7 bits (66), Expect = 2.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 330 HVPLNSLQHCTVCDATQSSNGGRSVPSSLPVMSFVSEEVTMITSCAIGLNS 178
H+P SL+ C V +S S +S V S + T + +C GL S
Sbjct: 56 HLPEGSLKRCCVLGLPPTSPASSSPCASSDVTSIIRSSQTSLVTCVNGLRS 106
>BC101799-1|AAI01800.1| 620|Homo sapiens GLIS family zinc finger 1
protein.
Length = 620
Score = 30.7 bits (66), Expect = 2.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 330 HVPLNSLQHCTVCDATQSSNGGRSVPSSLPVMSFVSEEVTMITSCAIGLNS 178
H+P SL+ C V +S S +S V S + T + +C GL S
Sbjct: 56 HLPEGSLKRCCVLGLPPTSPASSSPCASSDVTSIIRSSQTSLVTCVNGLRS 106
>AL591720-1|CAH72026.1| 620|Homo sapiens GLIS family zinc finger 1
protein.
Length = 620
Score = 30.7 bits (66), Expect = 2.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 330 HVPLNSLQHCTVCDATQSSNGGRSVPSSLPVMSFVSEEVTMITSCAIGLNS 178
H+P SL+ C V +S S +S V S + T + +C GL S
Sbjct: 56 HLPEGSLKRCCVLGLPPTSPASSSPCASSDVTSIIRSSQTSLVTCVNGLRS 106
>AK090634-1|BAC03494.1| 620|Homo sapiens protein ( Homo sapiens
cDNA FLJ33315 fis, clone BNGH42007037, moderately
similar to ZINC FINGER PROTEIN GLI1 (GLI). ).
Length = 620
Score = 30.7 bits (66), Expect = 2.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 330 HVPLNSLQHCTVCDATQSSNGGRSVPSSLPVMSFVSEEVTMITSCAIGLNS 178
H+P SL+ C V +S S +S V S + T + +C GL S
Sbjct: 56 HLPEGSLKRCCVLGLPPTSPASSSPCASSDVTSIIRSSQTSLVTCVNGLRS 106
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,223,265
Number of Sequences: 237096
Number of extensions: 1428980
Number of successful extensions: 2616
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2616
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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