BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0779 (493 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga... 105 2e-23 At3g09220.1 68416.m01096 laccase family protein / diphenol oxida... 29 2.2 At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge... 27 5.2 At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge... 27 5.2 At5g51110.1 68418.m06338 expressed protein 27 9.1 >At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) {Homo sapiens}; contains Pfam profile: PF01602 Adaptin N terminal region Length = 886 Score = 105 bits (251), Expect = 2e-23 Identities = 49/75 (65%), Positives = 59/75 (78%) Frame = +2 Query: 2 NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181 N V PR+C ++TK+LYLLNQGE T EAT++FF+ TKLFQSKD LRR+VYL IKE Sbjct: 37 NDPQVDPRRCSQVITKLLYLLNQGESFTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKE 96 Query: 182 LSPMAQDVIIVTSSL 226 LSP + +VIIVTSSL Sbjct: 97 LSPSSDEVIIVTSSL 111 Score = 60.9 bits (141), Expect = 5e-10 Identities = 33/79 (41%), Positives = 40/79 (50%) Frame = +1 Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435 YR AIR LC I D T+L IERY+KQAIVDKNP P +V+ N Sbjct: 122 YRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWSN 181 Query: 436 EAHEAMTSDHVMGSYQALA 492 E E + S + + ALA Sbjct: 182 EVQEGIQSRSALVQFHALA 200 >At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase family protein similar to laccase [Pinus taeda][GI:13661201], laccase GB:CAA74105 [Populus balsamifera subsp. trichocarpa]; contains Pfam profile: Multicopper oxidases Length = 567 Score = 28.7 bits (61), Expect = 2.2 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -2 Query: 255 PSSLPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTTSFD*NSFVVAKNISVASCV 85 P +PV +V EE M+ + +GL + T + + S +SFV+ K +S+ V Sbjct: 347 PHWVPVPRYVDEE--MLVTIGLGLEACADNTTCPKFSASMSNHSFVLPKKLSILEAV 401 >At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycogenin)-related low similarity to glycogenin-2 from Homo sapiens [SP|O15488] Length = 389 Score = 27.5 bits (58), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 Query: 378 QCGRSYCGILINNSLFHVPLNSLQ 307 QCGR +C + IN +FH L LQ Sbjct: 71 QCGR-FCAVFINPCIFHTGLFVLQ 93 >At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycogenin)-related low similarity to glycogenin-2 from Homo sapiens [SP|O15488] Length = 497 Score = 27.5 bits (58), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 Query: 378 QCGRSYCGILINNSLFHVPLNSLQ 307 QCGR +C + IN +FH L LQ Sbjct: 179 QCGR-FCAVFINPCIFHTGLFVLQ 201 >At5g51110.1 68418.m06338 expressed protein Length = 220 Score = 26.6 bits (56), Expect = 9.1 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -3 Query: 377 SAADPTAGFLSTIACFMYLSIACSIVLSVMLHKARMAAGRYHRLYPSCPS*VK 219 S D AG L + C + L +HK A+G Y L+ P+ V+ Sbjct: 130 SIVDNEAGGLKIRCMWKVRDFGCGVELINRIHKVAEASGHYPSLHLESPTQVR 182 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,895,945 Number of Sequences: 28952 Number of extensions: 210528 Number of successful extensions: 487 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 487 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 858708096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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