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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0779
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga...   105   2e-23
At3g09220.1 68416.m01096 laccase family protein / diphenol oxida...    29   2.2  
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    27   5.2  
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    27   5.2  
At5g51110.1 68418.m06338 expressed protein                             27   9.1  

>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative
           similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
           coat protein) (Gamma-2 COP) {Homo sapiens}; contains
           Pfam profile: PF01602 Adaptin N terminal region
          Length = 886

 Score =  105 bits (251), Expect = 2e-23
 Identities = 49/75 (65%), Positives = 59/75 (78%)
 Frame = +2

Query: 2   NSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKE 181
           N   V PR+C  ++TK+LYLLNQGE  T  EAT++FF+ TKLFQSKD  LRR+VYL IKE
Sbjct: 37  NDPQVDPRRCSQVITKLLYLLNQGESFTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKE 96

Query: 182 LSPMAQDVIIVTSSL 226
           LSP + +VIIVTSSL
Sbjct: 97  LSPSSDEVIIVTSSL 111



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 33/79 (41%), Positives = 40/79 (50%)
 Frame = +1

Query: 256 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPGLVRPSVN 435
           YR  AIR LC I D T+L  IERY+KQAIVDKNP                 P +V+   N
Sbjct: 122 YRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWSN 181

Query: 436 EAHEAMTSDHVMGSYQALA 492
           E  E + S   +  + ALA
Sbjct: 182 EVQEGIQSRSALVQFHALA 200


>At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], laccase GB:CAA74105 [Populus
           balsamifera subsp. trichocarpa]; contains Pfam profile:
           Multicopper oxidases
          Length = 567

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 255 PSSLPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTTSFD*NSFVVAKNISVASCV 85
           P  +PV  +V EE  M+ +  +GL +     T  + + S   +SFV+ K +S+   V
Sbjct: 347 PHWVPVPRYVDEE--MLVTIGLGLEACADNTTCPKFSASMSNHSFVLPKKLSILEAV 401


>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 378 QCGRSYCGILINNSLFHVPLNSLQ 307
           QCGR +C + IN  +FH  L  LQ
Sbjct: 71  QCGR-FCAVFINPCIFHTGLFVLQ 93


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 378 QCGRSYCGILINNSLFHVPLNSLQ 307
           QCGR +C + IN  +FH  L  LQ
Sbjct: 179 QCGR-FCAVFINPCIFHTGLFVLQ 201


>At5g51110.1 68418.m06338 expressed protein
          Length = 220

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -3

Query: 377 SAADPTAGFLSTIACFMYLSIACSIVLSVMLHKARMAAGRYHRLYPSCPS*VK 219
           S  D  AG L     +      C + L   +HK   A+G Y  L+   P+ V+
Sbjct: 130 SIVDNEAGGLKIRCMWKVRDFGCGVELINRIHKVAEASGHYPSLHLESPTQVR 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,945
Number of Sequences: 28952
Number of extensions: 210528
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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