Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0778
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    33   0.054
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    31   0.16 
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    26   6.2  

>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 123 RTDSRFTMSETAQVSSLPLPPMQYINFYTDENVRRNRAPLPPRPFM 260
           R +  ++   +  +SSL +P  ++++   D N++R+ +PL   PF+
Sbjct: 194 RNNHHYSRKSSPHISSLAVPSTKHLDGERDRNLKRSTSPLSSSPFV 239


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 508 LNEFRPHQARETLRVMMELQKRQRVETAARFKKH 609
           +N++RPHQ+RE+L +++E Q +         + H
Sbjct: 271 INDYRPHQSRESLIMLLEKQLKHEESQVELLRTH 304


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 715 PFGPTIHLAL*NLIPIHFDLVSFGEHSVKYP 623
           P+GPT+  +L N++  H D+ + G  S  YP
Sbjct: 156 PYGPTLSFSLHNVVLRH-DIPNTGTMSEAYP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,793
Number of Sequences: 5004
Number of extensions: 52751
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)