BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0778 (718 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091... 36 0.024 12_01_0686 - 5855216-5858263 28 6.4 05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 28 6.4 12_01_0708 - 6137865-6140909 28 8.5 03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 28 8.5 01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127... 28 8.5 >04_04_1467 - 33808507-33808588,33808869-33808942,33809028-33809194, 33809392-33809461,33809544-33809681 Length = 176 Score = 36.3 bits (80), Expect = 0.024 Identities = 21/54 (38%), Positives = 31/54 (57%) Frame = +1 Query: 508 LNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSLPDQNE 669 LN RPHQAR TL M+E Q ++R + K+ ++ Q +L +L L D N+ Sbjct: 118 LNSLRPHQARATLIHMLENQIQRRKQAIEDIKQRREEAQKLLGESLLIL-DGNQ 170 Score = 32.7 bits (71), Expect = 0.30 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +2 Query: 266 YSMFGNSFNADDAIIRSLESQGFRRLYPM--HFERRRELKKXXXXXXXXXXXXXXXXVHC 439 Y +FG ++ D ++ SLE QG R+LYP + ++EL+ V Sbjct: 38 YQLFGATYTTD-VVLPSLEDQGVRQLYPKSPDIDFKKELRTLNRELQLHILELADILVER 96 Query: 440 PDSPKRAEKVEDLS 481 P + A +VED+S Sbjct: 97 PS--QYARRVEDIS 108 >12_01_0686 - 5855216-5858263 Length = 1015 Score = 28.3 bits (60), Expect = 6.4 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = -1 Query: 679 LIPIHFDLVSFGEHSVKYPVPCLSVS*ILLQFQPSVFSAIP 557 L+P+H + + +S++ P+P L + + FS+IP Sbjct: 580 LLPLHIEFLDLSFNSIEGPIPIPQEGSSTLDYSSNQFSSIP 620 >05_04_0209 - 19073147-19074041,19074117-19074163,19074258-19074437, 19074839-19074955,19075105-19075227,19075391-19075776, 19076177-19076303,19077140-19077202,19078035-19078086, 19078189-19080023 Length = 1274 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = +1 Query: 544 LRVMMELQKRQRVETAARFKKHLDKVQG-ILQNALQSLPDQNELESN 681 L V +L VE +K +D I+ N L S+PD N+ +N Sbjct: 645 LEVFPQLNFLTLVEVCMEYKNDIDGAADYIIHNVLPSIPDNNDAHAN 691 >12_01_0708 - 6137865-6140909 Length = 1014 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/48 (25%), Positives = 24/48 (50%) Frame = -1 Query: 679 LIPIHFDLVSFGEHSVKYPVPCLSVS*ILLQFQPSVFSAIPSLLSMFL 536 L+P+ D +S++ P+P +L + + FS++P S +L Sbjct: 581 LLPLEIDFFDLSFNSIEGPIPVPQEGSTMLDYSSNQFSSMPLHYSTYL 628 >03_03_0254 + 15884149-15884295,15884765-15884803,15884958-15885136, 15887175-15887310,15887769-15887865,15888448-15888534, 15888621-15888721,15888905-15888939,15889520-15889577, 15889650-15889724,15890048-15890135,15890155-15890308, 15890395-15890638 Length = 479 Score = 27.9 bits (59), Expect = 8.5 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 6/40 (15%) Frame = +3 Query: 165 SSLPLPP----MQYINFYTDENVRRN--RAPLPPRPFMIL 266 +SL LPP +Q FYTD N+RR+ LP +P M+L Sbjct: 67 TSLGLPPSSIALQAAEFYTDLNMRRSFQSVVLPFKPDMLL 106 >01_07_0369 - 43111835-43111882,43112172-43112245,43112670-43112754, 43112930-43113022,43113099-43113163,43114051-43114142, 43114240-43114527,43114642-43114706,43115421-43115502, 43115578-43115669,43116169-43116301,43116380-43116501, 43116624-43116725,43116853-43116892,43117032-43117103, 43117241-43117320,43117444-43117818 Length = 635 Score = 27.9 bits (59), Expect = 8.5 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -1 Query: 595 LLQFQPSVFSAIPSLLSMFLLLGVA*IHLKMMYMNK*QT*VFYFFCSL 452 +L Q A+PSLL + LG+ I K+M + T VFY +C++ Sbjct: 558 ILILQSQAIKAVPSLLGRYEGLGLYNIFTKVMILF--ATQVFYGYCAV 603 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,382,239 Number of Sequences: 37544 Number of extensions: 287905 Number of successful extensions: 673 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 673 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1862792824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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