Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0778
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091...    36   0.024
12_01_0686 - 5855216-5858263                                           28   6.4  
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744...    28   6.4  
12_01_0708 - 6137865-6140909                                           28   8.5  
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851...    28   8.5  
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127...    28   8.5  

>04_04_1467 -
           33808507-33808588,33808869-33808942,33809028-33809194,
           33809392-33809461,33809544-33809681
          Length = 176

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +1

Query: 508 LNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSLPDQNE 669
           LN  RPHQAR TL  M+E Q ++R +     K+  ++ Q +L  +L  L D N+
Sbjct: 118 LNSLRPHQARATLIHMLENQIQRRKQAIEDIKQRREEAQKLLGESLLIL-DGNQ 170



 Score = 32.7 bits (71), Expect = 0.30
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 266 YSMFGNSFNADDAIIRSLESQGFRRLYPM--HFERRRELKKXXXXXXXXXXXXXXXXVHC 439
           Y +FG ++  D  ++ SLE QG R+LYP     + ++EL+                 V  
Sbjct: 38  YQLFGATYTTD-VVLPSLEDQGVRQLYPKSPDIDFKKELRTLNRELQLHILELADILVER 96

Query: 440 PDSPKRAEKVEDLS 481
           P   + A +VED+S
Sbjct: 97  PS--QYARRVEDIS 108


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 679 LIPIHFDLVSFGEHSVKYPVPCLSVS*ILLQFQPSVFSAIP 557
           L+P+H + +    +S++ P+P        L +  + FS+IP
Sbjct: 580 LLPLHIEFLDLSFNSIEGPIPIPQEGSSTLDYSSNQFSSIP 620


>05_04_0209 -
           19073147-19074041,19074117-19074163,19074258-19074437,
           19074839-19074955,19075105-19075227,19075391-19075776,
           19076177-19076303,19077140-19077202,19078035-19078086,
           19078189-19080023
          Length = 1274

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 544 LRVMMELQKRQRVETAARFKKHLDKVQG-ILQNALQSLPDQNELESN 681
           L V  +L     VE    +K  +D     I+ N L S+PD N+  +N
Sbjct: 645 LEVFPQLNFLTLVEVCMEYKNDIDGAADYIIHNVLPSIPDNNDAHAN 691


>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -1

Query: 679 LIPIHFDLVSFGEHSVKYPVPCLSVS*ILLQFQPSVFSAIPSLLSMFL 536
           L+P+  D      +S++ P+P       +L +  + FS++P   S +L
Sbjct: 581 LLPLEIDFFDLSFNSIEGPIPVPQEGSTMLDYSSNQFSSMPLHYSTYL 628


>03_03_0254 +
           15884149-15884295,15884765-15884803,15884958-15885136,
           15887175-15887310,15887769-15887865,15888448-15888534,
           15888621-15888721,15888905-15888939,15889520-15889577,
           15889650-15889724,15890048-15890135,15890155-15890308,
           15890395-15890638
          Length = 479

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +3

Query: 165 SSLPLPP----MQYINFYTDENVRRN--RAPLPPRPFMIL 266
           +SL LPP    +Q   FYTD N+RR+     LP +P M+L
Sbjct: 67  TSLGLPPSSIALQAAEFYTDLNMRRSFQSVVLPFKPDMLL 106


>01_07_0369 -
           43111835-43111882,43112172-43112245,43112670-43112754,
           43112930-43113022,43113099-43113163,43114051-43114142,
           43114240-43114527,43114642-43114706,43115421-43115502,
           43115578-43115669,43116169-43116301,43116380-43116501,
           43116624-43116725,43116853-43116892,43117032-43117103,
           43117241-43117320,43117444-43117818
          Length = 635

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 595 LLQFQPSVFSAIPSLLSMFLLLGVA*IHLKMMYMNK*QT*VFYFFCSL 452
           +L  Q     A+PSLL  +  LG+  I  K+M +    T VFY +C++
Sbjct: 558 ILILQSQAIKAVPSLLGRYEGLGLYNIFTKVMILF--ATQVFYGYCAV 603


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,239
Number of Sequences: 37544
Number of extensions: 287905
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)