Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0778
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  45   5e-05
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   30   2.2  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     28   8.7  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +3

Query: 162 VSSLPLPPMQYINFYTDENVRRNRAPLPPRP 254
           VS  PLPP+QY   YTDEN+ +  AP PP P
Sbjct: 31  VSPFPLPPIQYSKLYTDENIAQGNAPEPPPP 61



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +2

Query: 263 SYSMFGNSFNADDAIIRSLESQGFRRLYP 349
           SYS+FG SF +D++IIR LE QG  RLYP
Sbjct: 65  SYSVFGASFESDESIIRPLEVQGITRLYP 93


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 120  VRTDSRFTMSETAQVSSLPLPPMQYINFYTDENVRRNRAPLPPRPF 257
            VR D+R T + T+        P +     TDE  RR+RAP P + F
Sbjct: 981  VRQDTRKTRNPTSYSEGDERTPRRKREVDTDEGRRRDRAPKPRKSF 1026


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 520 RPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSLPDQNELESNFKVPNE 699
           R H  RE   VM  + +++ + T+    + L+ V  + +     L D    ES     N+
Sbjct: 155 RVHYLREVDEVMSWISEKEAIATSEEIGRDLEHVVVLQKKFDDFLKDLQANESRVTYIND 214

Query: 700 LLDQM 714
           L DQ+
Sbjct: 215 LADQL 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,360
Number of Sequences: 59808
Number of extensions: 346997
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)