Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0778
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032653-5|CAC42382.1|  251|Caenorhabditis elegans Hypothetical ...    37   0.013
AL032653-4|CAA21715.1|  253|Caenorhabditis elegans Hypothetical ...    37   0.013
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    29   3.3  
Z78015-5|CAB01432.2|  258|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatos...    28   5.8  
U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatos...    28   5.8  
U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatos...    28   5.8  
U23510-6|AAC46784.2|  236|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL032653-5|CAC42382.1|  251|Caenorhabditis elegans Hypothetical
           protein Y54E5B.3b protein.
          Length = 251

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +1

Query: 508 LNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSL 654
           +NEFRP QAR+++R++ E Q  +  +    FKK+L   + ++ +  Q +
Sbjct: 124 INEFRPVQARDSVRILQERQIEELSDICKDFKKYLRDGREVVDDQFQMI 172



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 162 VSSLPLPPMQYINFYTDENVRRNRAPLPPRP 254
           VS  P PP +Y + YT + +    AP PP P
Sbjct: 10  VSPFPNPP-EYASAYTSDRINNGSAPPPPHP 39


>AL032653-4|CAA21715.1|  253|Caenorhabditis elegans Hypothetical
           protein Y54E5B.3a protein.
          Length = 253

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +1

Query: 508 LNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSL 654
           +NEFRP QAR+++R++ E Q  +  +    FKK+L   + ++ +  Q +
Sbjct: 126 INEFRPVQARDSVRILQERQIEELSDICKDFKKYLRDGREVVDDQFQMI 174


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 284 SFNADDAIIRSLESQGFRRLYPMHFER 364
           S N DD  + S+  QG+ R YP   +R
Sbjct: 667 SVNGDDQNVESMHDQGYERQYPRQHQR 693


>Z78015-5|CAB01432.2|  258|Caenorhabditis elegans Hypothetical
           protein R02D5.3 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 266 YSMFGNSFNADDAIIRSLESQG 331
           YS  G++   DD+IIRS+  QG
Sbjct: 156 YSSIGSAIRIDDSIIRSISEQG 177


>U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform c protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 529 QARETLRVMMELQK-RQRVETAAR-FKKHLDKVQG 627
           Q  E    +MEL+K R   ET AR FK+HL++++G
Sbjct: 565 QIFEQQTTLMELEKSRSEYETRARIFKEHLEELRG 599


>U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform b protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 529 QARETLRVMMELQK-RQRVETAAR-FKKHLDKVQG 627
           Q  E    +MEL+K R   ET AR FK+HL++++G
Sbjct: 565 QIFEQQTTLMELEKSRSEYETRARIFKEHLEELRG 599


>U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform a protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 529 QARETLRVMMELQK-RQRVETAAR-FKKHLDKVQG 627
           Q  E    +MEL+K R   ET AR FK+HL++++G
Sbjct: 565 QIFEQQTTLMELEKSRSEYETRARIFKEHLEELRG 599


>U23510-6|AAC46784.2|  236|Caenorhabditis elegans Hypothetical
           protein R12C12.5 protein.
          Length = 236

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 514 EFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSLPDQNELESNFKVP 693
           E R  Q  E+ +  M+  K+  +  A R KKH ++    +   L  L  Q     N  + 
Sbjct: 58  ELRIEQEVESAKKYMKTNKKMAL-AALRKKKHYEQELSRIDGVLTKLEAQRTALENVGMH 116

Query: 694 NELLD 708
           NE++D
Sbjct: 117 NEVID 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,781
Number of Sequences: 27780
Number of extensions: 286061
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)