Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0777
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 40 0.001
03_01_0249 - 1935355-1935827,1936129-1936330 39 0.003
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 39 0.004
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 37 0.016
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 37 0.016
11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436 35 0.063
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 32 0.44
11_02_0046 + 7711536-7711568,7711685-7711850,7712251-7712339,771... 31 0.58
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 31 0.77
11_06_0577 - 25158833-25162864 30 1.8
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 30 1.8
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 29 2.4
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 2.4
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 27 9.5
04_03_1007 - 21670780-21671368,21671477-21671685 27 9.5
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 248 KELDFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYLE-FYLDSDL 424
K L++E V++ KGE F+++NP +P L DA+I DS I YLE Y + L
Sbjct: 35 KGLEYEYKAVNLLKGEHSDPEFMKVNPMKFVPALVDGDAVIGDSYAIALYLEDKYPEHPL 94
Query: 425 VP 430
+P
Sbjct: 95 LP 96
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 242 IRKELDFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYL-EFYLDS 418
+ K++ F+ VD++KGE S FL++ P G++P K + +S I Y+ + Y DS
Sbjct: 24 LEKDVPFQVEPVDMSKGEHKSPSFLKLQPFGQVPAFKDSLTTVFESRAICRYICDQYADS 83
Query: 419 DLVPLINVSKDTKV 460
L+ +D V
Sbjct: 84 GNKTLMGRKEDGAV 97
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +2
Query: 257 DFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYLEFYLDSDLVPLI 436
D+E + VD GEQ S +E NP G+IP L+ D ++ +S I Y+ S V L+
Sbjct: 28 DYELVTVDFLAGEQNSPEHVERNPFGKIPALQDGDLVLFESRAIAKYILRKYKSSKVDLL 87
Query: 437 NVSKDTKVVTTINKFREL 490
S D + ++ + E+
Sbjct: 88 RES-DIREAALVDVWTEV 104
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 248 KELDFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYLE 403
K L ++ +VD+ WFL+I+P G++P++K+++ + DS I +E
Sbjct: 93 KHLPYDIKLVDLANKPD---WFLKISPEGKVPIVKLEEQWVADSDVITQAIE 141
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 248 KELDFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYL 400
K LDF+ + VD+ FL +NP G+IPVL+ D ++ +S I Y+
Sbjct: 29 KGLDFDLVPVDLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINRYI 79
>11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436
Length = 79
Score = 34.7 bits (76), Expect = 0.063
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 254 LDFEPLIVDITKGEQYSSWFLEINPRGEIPVL 349
+DFE + VD+ K E S F +INP G++P +
Sbjct: 28 IDFEEVTVDLFKREHLSPEFKKINPMGQVPAI 59
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 257 DFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYLEFYLDSDLVPLI 436
++E + VD++ GE + NP G++P + D + +S I Y+ SDL+
Sbjct: 28 EYEVVPVDMSTGEHKRPPHISRNPFGQVPAFEDGDLTLFESRAISKYILRKHGSDLLRES 87
Query: 437 NVSKDTKV 460
N+S+ V
Sbjct: 88 NLSESAMV 95
>11_02_0046 +
7711536-7711568,7711685-7711850,7712251-7712339,
7712443-7712514,7712807-7712860,7713000-7713075,
7713238-7713299,7713445-7713504,7713663-7713773
Length = 240
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 248 KELDFEPLIVDITKGEQYSSWFLEINPRGEIPVL-KVKDALIPDSTRILDYLE-FYLDSD 421
K LD+E +++ EQ F ++NP +P L D ++ DS IL YLE Y
Sbjct: 47 KGLDYEYKPINLLANEQSHPEFEKLNPMKYVPALVDGDDTVVVDSFAILLYLEDTYPQHP 106
Query: 422 LVP 430
L+P
Sbjct: 107 LLP 109
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 257 DFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIPDSTRILDYL 400
++E + +D +KGE + L NP G++P L+ D + +S I Y+
Sbjct: 28 EYEIVPLDFSKGEHKAPDHLARNPFGQVPALQDGDLFLWESRAICKYV 75
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 347 LKVKDALIPDSTRILDYLEFYLDSDLVPLINVSKDTKVVTTINKFREL 490
LK + I S RI +E + +++ +NVS+D ++T I K R+L
Sbjct: 963 LKRHEETISSSVRIPRKIEKMVKMEVMYSVNVSRDGNMLTEIGKLRQL 1010
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 311 FLEINPRGEIPVLKVKDALIPDSTRILDYL 400
FL++NP G+IPVL+ D + +S I Y+
Sbjct: 45 FLKMNPIGKIPVLETPDGPVFESNAIARYV 74
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 311 FLEINPRGEIPVLKVKDALIPDSTRILDYLEFYLDSDLVPLINVSK 448
+L++NP G++P+L+ D + +S I Y+ L S P + SK
Sbjct: 606 YLKMNPIGKVPILETPDGPVFESNAIARYV---LSSSHFPEVTRSK 648
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 311 FLEINPRGEIPVLKVKDALIPDSTRILDYL 400
FL++NP G+IPVL+ + + +S I Y+
Sbjct: 69 FLKMNPLGKIPVLETPEGAVFESNAIARYV 98
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 227 GFNGFIRKELDFEPLIVDITKGEQYSSW--FLE 319
GF G + + LDF + + + G Y SW FLE
Sbjct: 967 GFPGMVSRPLDFRTIDIRLAMGAYYGSWEAFLE 999
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 311 FLEINPRGEIPVLKVKDA-LIPDSTRILDYLE 403
FL+I+P G++PV D IPDS I +E
Sbjct: 49 FLKISPEGKVPVFNGGDGKWIPDSDVITQVIE 80
>04_03_1007 - 21670780-21671368,21671477-21671685
Length = 265
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 248 KELDFEPLIVDITKGEQYSSWFLEINPRGEIPVLKVKDALIP---DSTRILDYLEFYLDS 418
K +D+ V+ G+ + F +NP ++PV + +I D + LD L +L
Sbjct: 22 KGIDYTSYHVNPLTGKNMNVAFFRMNPSAKLPVFQNGAHVIYRAFDIIQYLDRLSVHLSG 81
Query: 419 DLVPL 433
++VP+
Sbjct: 82 EIVPV 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,361
Number of Sequences: 37544
Number of extensions: 238771
Number of successful extensions: 477
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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