Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0776
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    26   4.7  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   8.2  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   8.2  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   8.2  

>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
 Frame = -3

Query: 645 GRRLSVPNPNQCAA------FLIE*WLSSEVKMTISGKFLMPFLL------TSGKALN 508
           G  +++P P+ C+        LIE  L   V++ I+GK + P+LL      + GK+LN
Sbjct: 262 GTLVAIPTPHHCSIDYEKMEALIETCLQRSVQLGITGKNVTPWLLGELLRESKGKSLN 319


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 436 ESQTVTVYLVLVVAFQCYMLWL 501
           ES T    L  +VA QC+ LWL
Sbjct: 303 ESSTFAFTLAKLVATQCHRLWL 324


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 100 DRVLQIVKDERKKDVPLVRFKHPEELEAILDL 195
           D +   ++D    D P V+F +PEE E  LDL
Sbjct: 259 DMISVPLQDSPNPDFPTVKFPNPEE-EGALDL 289


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 73  LFKMDLSFLDRV-LQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVNDDDLERCVRQV 249
           L+K+ ++  ++  L  V +  ++D  + + +H +    + +L+     +D+DLE      
Sbjct: 268 LYKLSINHNNKTTLLAVHNSEERDYMVRQARHHQ----LQELENWSRKHDEDLEFSRELE 323

Query: 250 LHTASKQIRQRSKTSYMAALIHMD 321
            HT S+Q    S TS+     ++D
Sbjct: 324 YHTKSEQADMCSYTSFQVLCKNLD 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,470
Number of Sequences: 5004
Number of extensions: 59588
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)