Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0776
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0277 - 2262557-2264128                                           36   0.032
01_06_0855 - 32494491-32496092                                         32   0.40 
11_04_0284 + 15770208-15770409,15770915-15771146,15771550-157717...    32   0.52 
04_01_0188 - 2208001-2208576,2211502-2211513,2212837-2212970,221...    32   0.52 
10_01_0032 + 406462-406714,407433-407664,408026-408219,408340-40...    30   2.1  
02_02_0117 - 6963648-6963784,6963922-6963989,6964379-6964456,696...    29   2.8  
11_06_0526 - 24585161-24587119                                         29   3.7  
01_06_0964 + 33446750-33447868                                         28   8.5  

>08_01_0277 - 2262557-2264128
          Length = 523

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 321 LAGAWIAEAFNTSQYTFEVAPVFTLIELKVLNHILNLFGIP 443
           +AG  IA A NT  +T++ AP  T +E+  L+ +  L G+P
Sbjct: 113 IAGELIASAMNTVGFTWQAAPAATELEVLALDWLAQLLGLP 153


>01_06_0855 - 32494491-32496092
          Length = 533

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 539 GMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPI 649
           G R + ++V++ S+ +H++ RKAA   G   E  R I
Sbjct: 206 GARRIGDLVVYCSDQTHFAFRKAARIAGIPREHCREI 242


>11_04_0284 +
           15770208-15770409,15770915-15771146,15771550-15771743,
           15771858-15771991,15772204-15772435,15772487-15772682,
           15774964-15775002,15775969-15775987,15776131-15776274
          Length = 463

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 539 GMRNLPEMVIFTSEDSHYSIRKAA 610
           G    PE +I+ S+DSHYSI KAA
Sbjct: 145 GRELYPEGIIYASQDSHYSIFKAA 168


>04_01_0188 -
           2208001-2208576,2211502-2211513,2212837-2212970,
           2213147-2213262,2214844-2215075,2218483-2218548,
           2219661-2219750,2221340-2221388
          Length = 424

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +2

Query: 539 GMRNLPEMVIFTSEDSHYSIRKAA 610
           G    PE +I+TS DSHYSI KAA
Sbjct: 146 GRELFPEGIIYTSCDSHYSIFKAA 169


>10_01_0032 +
           406462-406714,407433-407664,408026-408219,408340-408473,
           408847-409437
          Length = 467

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 539 GMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIKANEHGQMIVSELEKAIE 703
           G    P+ +++ S DSHYS+ KAA    +  + +R I     G+M  ++L+  ++
Sbjct: 162 GRELFPDGILYASNDSHYSVFKAAKM--YRVKCIR-IATTVSGEMNYADLKSKLQ 213


>02_02_0117 -
           6963648-6963784,6963922-6963989,6964379-6964456,
           6964556-6964647,6964735-6964803,6965360-6965483,
           6965640-6965763,6966568-6966686,6966965-6967056,
           6967251-6967454,6967823-6967942,6968687-6968782,
           6968862-6968965,6970714-6970861
          Length = 524

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 429 LFGIPNGDGIFSPGGSVSM-LYALVAASLKLFPKSR 533
           L+  PN D +F PGG  S+ L  +    L L P+ R
Sbjct: 202 LYNFPNNDLLFPPGGCTSLRLPVVTGQDLNLVPRCR 237


>11_06_0526 - 24585161-24587119
          Length = 652

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +1

Query: 106 VLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVNDDDL 228
           +++ V+DE ++DV LV  +H E+ E   D D+G E +DD++
Sbjct: 52  LVEHVEDEEEEDVNLV--EHVEDEE---DFDLGDEEDDDEV 87


>01_06_0964 + 33446750-33447868
          Length = 372

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +3

Query: 294 LYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIELKVLNHILNLFGIPNGDGIFSPGG 473
           L  C    GLA   +A+A        +V    T +   + +H+  L G+ +G    S G 
Sbjct: 119 LEDCVQLMGLARDRLADAAGAPDVDVDVDDARTWLSAVLTDHVTCLDGLDDGPLRDSVGA 178

Query: 474 SVSMLYALVAASL 512
            +  L +L +ASL
Sbjct: 179 HLEPLKSLASASL 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,866,376
Number of Sequences: 37544
Number of extensions: 379778
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)