Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0776
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             29   5.0  
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  29   5.0  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   28   6.6  
SB_28669| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.59)             28   6.6  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +1

Query: 145 PLVRFKHPEELEAILDLDIGQEVNDDDLERCVRQVLHTASKQIRQRSKTSYMAALIHMD 321
           PLV  K   E EA+  +   Q+  DD+L   + ++  T  K    + K S   ALI  D
Sbjct: 444 PLVEEKLDLEGEAMSSIQNKQDETDDELRSTLVRLHATEKKTAEAQGKASQERALIKQD 502


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 526 SQEERHEKLTGDGHFYF*RQPLLNQ-KSCALVRIRNREPSSHKGE*TRAND 675
           S+  RH KL GDG  +F +       +   + +IRNRE S      TR+N+
Sbjct: 107 SKTPRHSKLRGDGSSHFAKGRKRGYLRRLKVTQIRNRETSQSLLTMTRSNE 157


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 46  KHVCRVP*RLFKMDLSFLDRVLQIVKDERKKDVPLVRFKHPEELEAILDL 195
           +H  R P +  KM++    R +Q+ K     +   ++ K P++L+ ILD+
Sbjct: 49  RHGDRTPKQKLKMEIRH-PRFIQLFKRHNSHNEKKLKLKRPKQLQEILDI 97


>SB_28669| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.59)
          Length = 543

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 46  KHVCRVP*RLFKMDLSFLDRVLQIVKDERKKDVPLVRFKHPEELEAILDL 195
           +H  R P +  KM++    R +Q+ K     +   ++ K P++L+ ILD+
Sbjct: 377 RHGDRTPKQKLKMEIRH-PRFIQLFKRHNSHNEKKLKLKRPKQLQEILDI 425


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 118  VKDERK--KDVPLVRFKHPEELEAILD--LDIGQEVNDDDLE 231
            VKD  K  ++V L R KH EELE + D  L + +E+ D   E
Sbjct: 964  VKDAEKDLEEVKLERRKHQEELETLKDKTLKVERELRDSQQE 1005


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,820,126
Number of Sequences: 59808
Number of extensions: 434755
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)