BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0776 (716 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical... 74 9e-14 AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical... 74 9e-14 AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical... 74 9e-14 AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid... 74 9e-14 U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical pr... 33 0.20 U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical pr... 33 0.20 AC006615-7|AAK68227.1| 450|Caenorhabditis elegans Hypothetical ... 29 4.4 U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 5.8 U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 5.8 AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 5.8 Z35719-4|CAA84798.1| 279|Caenorhabditis elegans Hypothetical pr... 28 7.7 U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 28 7.7 DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 28 7.7 DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 7.7 AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 28 7.7 AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 7.7 AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 7.7 AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 7.7 >AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical protein Y37D8A.23c protein. Length = 433 Score = 74.1 bits (174), Expect = 9e-14 Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Frame = +3 Query: 237 C*TSLTYSVKTDKATFKNQLYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIELKVLN 416 C L V+T F NQ+ D +AG W+ NT+ +T+E+APVF L+E V+ Sbjct: 12 CEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEKSVMA 71 Query: 417 HILNLFG--IPNGDGIFSPGGSVSMLYALVAASLKLFPKSR 533 + G DGIF+PGG+++ LYA+ AA +L+P+S+ Sbjct: 72 RMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSK 112 Score = 56.8 bits (131), Expect = 1e-08 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +2 Query: 482 NVICSGCS*FKAFPEVKRKGMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIKANE 661 N+ + + +P K GM+++P + FTSEDSHYSI+ A+ LG G + I ++ Sbjct: 96 NLYAMNAARHQLWPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADYCFNIPTDK 155 Query: 662 HGQMIVSELE-KAIEREKK 715 +G+MI LE K IE +K+ Sbjct: 156 NGKMIPEALEAKIIECKKE 174 >AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical protein Y37D8A.23b protein. Length = 445 Score = 74.1 bits (174), Expect = 9e-14 Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Frame = +3 Query: 237 C*TSLTYSVKTDKATFKNQLYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIELKVLN 416 C L V+T F NQ+ D +AG W+ NT+ +T+E+APVF L+E V+ Sbjct: 87 CEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEKSVMA 146 Query: 417 HILNLFG--IPNGDGIFSPGGSVSMLYALVAASLKLFPKSR 533 + G DGIF+PGG+++ LYA+ AA +L+P+S+ Sbjct: 147 RMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSK 187 Score = 56.8 bits (131), Expect = 1e-08 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +2 Query: 482 NVICSGCS*FKAFPEVKRKGMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIKANE 661 N+ + + +P K GM+++P + FTSEDSHYSI+ A+ LG G + I ++ Sbjct: 171 NLYAMNAARHQLWPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADYCFNIPTDK 230 Query: 662 HGQMIVSELE-KAIEREKK 715 +G+MI LE K IE +K+ Sbjct: 231 NGKMIPEALEAKIIECKKE 249 Score = 35.9 bits (79), Expect = 0.029 Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 4/43 (9%) Frame = +1 Query: 94 FLDRVLQI----VKDERKKDVPLVRFKHPEELEAILDLDIGQE 210 FL+R++Q+ +KD+ +D ++ F HP++++ ++DL I ++ Sbjct: 34 FLNRIVQVLLKYIKDQNDRDQKILEFHHPDKMQMLMDLSIPEK 76 >AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical protein Y37D8A.23a protein. Length = 508 Score = 74.1 bits (174), Expect = 9e-14 Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Frame = +3 Query: 237 C*TSLTYSVKTDKATFKNQLYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIELKVLN 416 C L V+T F NQ+ D +AG W+ NT+ +T+E+APVF L+E V+ Sbjct: 87 CEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEKSVMA 146 Query: 417 HILNLFG--IPNGDGIFSPGGSVSMLYALVAASLKLFPKSR 533 + G DGIF+PGG+++ LYA+ AA +L+P+S+ Sbjct: 147 RMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSK 187 Score = 56.8 bits (131), Expect = 1e-08 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +2 Query: 482 NVICSGCS*FKAFPEVKRKGMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIKANE 661 N+ + + +P K GM+++P + FTSEDSHYSI+ A+ LG G + I ++ Sbjct: 171 NLYAMNAARHQLWPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADYCFNIPTDK 230 Query: 662 HGQMIVSELE-KAIEREKK 715 +G+MI LE K IE +K+ Sbjct: 231 NGKMIPEALEAKIIECKKE 249 Score = 35.9 bits (79), Expect = 0.029 Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 4/43 (9%) Frame = +1 Query: 94 FLDRVLQI----VKDERKKDVPLVRFKHPEELEAILDLDIGQE 210 FL+R++Q+ +KD+ +D ++ F HP++++ ++DL I ++ Sbjct: 34 FLNRIVQVLLKYIKDQNDRDQKILEFHHPDKMQMLMDLSIPEK 76 >AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid decarboxylase protein. Length = 508 Score = 74.1 bits (174), Expect = 9e-14 Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Frame = +3 Query: 237 C*TSLTYSVKTDKATFKNQLYGCTDPYGLAGAWIAEAFNTSQYTFEVAPVFTLIELKVLN 416 C L V+T F NQ+ D +AG W+ NT+ +T+E+APVF L+E V+ Sbjct: 87 CEDVLRLGVRTGHPRFFNQISCGLDLVSMAGEWLTATANTNMFTYEIAPVFILMEKSVMA 146 Query: 417 HILNLFG--IPNGDGIFSPGGSVSMLYALVAASLKLFPKSR 533 + G DGIF+PGG+++ LYA+ AA +L+P+S+ Sbjct: 147 RMWEAVGWDPEKADGIFAPGGAIANLYAMNAARHQLWPRSK 187 Score = 56.8 bits (131), Expect = 1e-08 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +2 Query: 482 NVICSGCS*FKAFPEVKRKGMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIKANE 661 N+ + + +P K GM+++P + FTSEDSHYSI+ A+ LG G + I ++ Sbjct: 171 NLYAMNAARHQLWPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADYCFNIPTDK 230 Query: 662 HGQMIVSELE-KAIEREKK 715 +G+MI LE K IE +K+ Sbjct: 231 NGKMIPEALEAKIIECKKE 249 Score = 35.9 bits (79), Expect = 0.029 Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 4/43 (9%) Frame = +1 Query: 94 FLDRVLQI----VKDERKKDVPLVRFKHPEELEAILDLDIGQE 210 FL+R++Q+ +KD+ +D ++ F HP++++ ++DL I ++ Sbjct: 34 FLNRIVQVLLKYIKDQNDRDQKILEFHHPDKMQMLMDLSIPEK 76 >U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical protein C41A3.2b protein. Length = 526 Score = 33.1 bits (72), Expect = 0.20 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Frame = +2 Query: 539 GMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIK-ANEHGQMI--VSELEKAIERE 709 G R+LPE VIFT E+SH S+ ++ + PIK N +G + EL K +R Sbjct: 384 GNRDLPEEVIFTKEESHSSLDSYSNHCNESQDD-EPIKMGNFNGSIAGNEKELSKTEQRA 442 Query: 710 KK 715 K+ Sbjct: 443 KR 444 >U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical protein C41A3.2a protein. Length = 795 Score = 33.1 bits (72), Expect = 0.20 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Frame = +2 Query: 539 GMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIK-ANEHGQMI--VSELEKAIERE 709 G R+LPE VIFT E+SH S+ ++ + PIK N +G + EL K +R Sbjct: 384 GNRDLPEEVIFTKEESHSSLDSYSNHCNESQDD-EPIKMGNFNGSIAGNEKELSKTEQRA 442 Query: 710 KK 715 K+ Sbjct: 443 KR 444 >AC006615-7|AAK68227.1| 450|Caenorhabditis elegans Hypothetical protein C36B7.1 protein. Length = 450 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 414 NHILNLFGIPNGDGIFSPGGSVSMLYAL 497 NH L +F +PNG F G +S Y++ Sbjct: 106 NHELGIFTLPNGSYCFKEGDHISYRYSI 133 >U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein K07E12.1b protein. Length = 12268 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +2 Query: 632 ESLRPIKANEHGQMIVSELEKAIE 703 E P K NE+GQ ++S+++ A+E Sbjct: 2232 EDGNPYKTNENGQFVISDVDGAVE 2255 >U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein K07E12.1a protein. Length = 13100 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +2 Query: 632 ESLRPIKANEHGQMIVSELEKAIE 703 E P K NE+GQ ++S+++ A+E Sbjct: 2295 EDGNPYKTNENGQFVISDVDGAVE 2318 >AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein. Length = 13100 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +2 Query: 632 ESLRPIKANEHGQMIVSELEKAIE 703 E P K NE+GQ ++S+++ A+E Sbjct: 2295 EDGNPYKTNENGQFVISDVDGAVE 2318 >Z35719-4|CAA84798.1| 279|Caenorhabditis elegans Hypothetical protein F17C8.6 protein. Length = 279 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +1 Query: 46 KHVCRVP*RLFKMD-LSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL D +SF D +L + +K + L EELE I++ ++ + Sbjct: 67 KHMCHEMERLHNGDDVSFHDVLNMLSYRSVDIRKSLQLEELLQREELEYIIEEEVAKHTI 126 Query: 217 DDDLERCVRQV 249 LE C++ + Sbjct: 127 RAWLENCLKNI 137 >U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 2 protein. Length = 1785 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +1 Query: 46 KHVCRVP*RLFKMD-LSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL D +SF D +L + +K + L EELE I++ ++ + Sbjct: 1573 KHMCHEMERLHNGDDVSFHDVLNMLSYRSVDIRKSLQLEELLQREELEYIIEEEVAKHTI 1632 Query: 217 DDDLERCVRQV 249 LE C++ + Sbjct: 1633 RAWLENCLKNI 1643 >DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1763 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +1 Query: 46 KHVCRVP*RLFKMD-LSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL D +SF D +L + +K + L EELE I++ ++ + Sbjct: 1551 KHMCHEMERLHNGDDVSFHDVLNMLSYRSVDIRKSLQLEELLQREELEYIIEEEVAKHTI 1610 Query: 217 DDDLERCVRQV 249 LE C++ + Sbjct: 1611 RAWLENCLKNI 1621 >DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1797 Score = 27.9 bits (59), Expect = 7.7 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = +1 Query: 46 KHVCRVP*RLFK-MDLSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL ++SF D +L + +K + L EELE I++ ++ ++ Sbjct: 1519 KHMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLEELLQREELEFIIEEEVAKQTI 1578 Query: 217 DDDLERCVRQVLHTASK 267 LE C+R++ + + K Sbjct: 1579 RTWLEGCLRKMRNPSQK 1595 >AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1785 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +1 Query: 46 KHVCRVP*RLFKMD-LSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL D +SF D +L + +K + L EELE I++ ++ + Sbjct: 1573 KHMCHEMERLHNGDDVSFHDVLNMLSYRSVDIRKSLQLEELLQREELEYIIEEEVAKHTI 1632 Query: 217 DDDLERCVRQV 249 LE C++ + Sbjct: 1633 RAWLENCLKNI 1643 >AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1831 Score = 27.9 bits (59), Expect = 7.7 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = +1 Query: 46 KHVCRVP*RLFK-MDLSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL ++SF D +L + +K + L EELE I++ ++ ++ Sbjct: 1553 KHMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLEELLQREELEFIIEEEVAKQTI 1612 Query: 217 DDDLERCVRQVLHTASK 267 LE C+R++ + + K Sbjct: 1613 RTWLEGCLRKMRNPSQK 1629 >AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 1, isoform c protein. Length = 1913 Score = 27.9 bits (59), Expect = 7.7 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = +1 Query: 46 KHVCRVP*RLFK-MDLSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL ++SF D +L + +K + L EELE I++ ++ ++ Sbjct: 1664 KHMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLEELLQREELEFIIEEEVAKQTI 1723 Query: 217 DDDLERCVRQVLHTASK 267 LE C+R++ + + K Sbjct: 1724 RTWLEGCLRKMRNPSQK 1740 >AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 1, isoform d protein. Length = 1861 Score = 27.9 bits (59), Expect = 7.7 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = +1 Query: 46 KHVCRVP*RLFK-MDLSFLD--RVLQIVKDERKKDVPLVRFKHPEELEAILDLDIGQEVN 216 KH+C RL ++SF D +L + +K + L EELE I++ ++ ++ Sbjct: 1583 KHMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLEELLQREELEFIIEEEVAKQTI 1642 Query: 217 DDDLERCVRQVLHTASK 267 LE C+R++ + + K Sbjct: 1643 RTWLEGCLRKMRNPSQK 1659 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,140,189 Number of Sequences: 27780 Number of extensions: 327421 Number of successful extensions: 861 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1676746902 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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