Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0776
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 346 ASAIQAPASPYGSVQP 299
           +S I  P SPYG V+P
Sbjct: 315 SSGILTPVSPYGYVKP 330



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 255 YSVKTDKATFKNQLYGCTDPYGLAG 329
           Y V+TD   F N      D Y +AG
Sbjct: 427 YDVQTDSIIFANNQPYTKDSYTVAG 451


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -2

Query: 535 PLDFGKSFKLAATRAYNIETLPPGLNIPSP-FGIPNKLRIWFKTLSSIRVKTGATSNVYW 359
           P  F  SF+++   AYN      GL    P    P  L    +  S +RV      +V  
Sbjct: 404 PAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVN- 462

Query: 358 LVLKASAIQAPAS 320
           ++ K S I  P S
Sbjct: 463 IIDKYSRIIFPVS 475


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 590 YSIRKAAHWLGFGTESLRPIKANEHGQMIVSELEKAIEREKK 715
           + I + A+  G+G ++++ IK        V E+    E EK+
Sbjct: 497 FCIFRTANGRGWGVKTMKTIKKGSFVTQYVGEVITNEEAEKR 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,073
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)