Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0775
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 79 7e-16
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 44 2e-05
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 30 0.32
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 29 0.57
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 29 0.99
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 2.3
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 27 3.0
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 27 4.0
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 5.3
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 7.0
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 9.2
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.2
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 79.0 bits (186), Expect = 7e-16
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +1
Query: 256 GLTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKY 435
GL GD+ RAL K+ PYCD+ + L+++L + R+VKP ILS F DIAL+IG+ F Y
Sbjct: 663 GLVGDLARALNAKILPYCDDFMTRLVQDLQSSVLDRNVKPAILSCFSDIALAIGAAFQTY 722
Query: 436 FDVVMQMLLQASNAQ 480
+ VM +L QAS+ Q
Sbjct: 723 LEAVMVLLQQASSVQ 737
Score = 52.4 bits (120), Expect = 7e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +2
Query: 11 VLKKVTPDDAPQISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDT 190
++++ PD SD IM LL + A K V ED L+A+ ++ L E+F Y+ +
Sbjct: 583 IIRRFGPDIRTS-SDQIMNLLLQTMQT-APKQSVVHEDVLLAIGAMMNSLEEQFEVYVPS 640
Query: 191 FKKYLYTGLKNHQEYQVCIAA 253
F +L + L N QEYQ+C A
Sbjct: 641 FVPFLSSALSNEQEYQLCSVA 661
Score = 33.1 bits (72), Expect = 0.046
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 612 EPHVPAIVNFMIQ-VANEEDRTDAQMAVISGLMGDLTNAFGAHVLPMLD 755
E +VP+ V F+ ++NE++ +AV GL+GDL A A +LP D
Sbjct: 635 EVYVPSFVPFLSSALSNEQEYQLCSVAV--GLVGDLARALNAKILPYCD 681
Score = 32.3 bits (70), Expect = 0.080
Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 552 GIIQGLKGVGSQVRPD--IAIVEPHVPAIVNFMIQVANEEDRTDAQMAVISGLMGDLTNA 725
GI++ G+ VR D + +++P+V ++ + + + + +++ GL+GDL +
Sbjct: 756 GIVEAYVGITQAVRTDNRLDLIQPYVHSMFTLLNMITADPECSESLTRAALGLLGDLAES 815
Query: 726 F 728
F
Sbjct: 816 F 816
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +1
Query: 259 LTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYF 438
L GD+C +++ PYCD ++V +L + P +H S + G++AL +G D ++
Sbjct: 712 LLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLHVSASNNAIWSAGEMALQLGKDMQQWV 771
Query: 439 DVVMQMLL 462
+++ L+
Sbjct: 772 KPLLERLI 779
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 20 KVTPDDAPQISDTIMTALLTVFASNAGKAGSVQ 118
+++ D+ +SDT+MT LTVF+ + G+A S Q
Sbjct: 543 RISKDEVTFLSDTLMTE-LTVFSRDLGEASSAQ 574
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 29.5 bits (63), Expect = 0.57
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 53 DTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYLYTGLK 220
D I+ LLT+ S VQE A+ ++T+ + ++F KY D L+ L+
Sbjct: 495 DDILQRLLTLLQS---PKRYVQEQAVTTIATVADAAAKKFEKYFDAIMPLLFNVLQ 547
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 650 LNHEVNDRRHV-RLDDSDVRSYLRTYTFKALNDSS 549
+ +++ DR H+ LD D+ + L+TY ++ DSS
Sbjct: 529 IGYKIYDRSHIPSLDKLDITTGLKTYEYEETKDSS 563
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 304 YCDEIIVLLLENLGDPSIHRSVKPEIL 384
Y D II LL+ N P + + KPEIL
Sbjct: 674 YIDSIIDLLIVNKSQPLVDKLGKPEIL 700
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 11 VLKKVTPDDAPQISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDT 190
+LKK+ + A D LLT+ S KAG +Q A L+EV ++ T
Sbjct: 183 ILKKLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIEV--NPSVRIPRT 240
Query: 191 FKKY 202
FK++
Sbjct: 241 FKRF 244
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 301 PYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFG 429
P +++ LL HR +KPE + + D L I SDFG
Sbjct: 273 PLLKQLLETLLHLHKQGVTHRDIKPENILITNDFHLKI-SDFG 314
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +1
Query: 301 PYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQ 480
P E +V LLE P I K + + G A + DF YF+ M L Q +
Sbjct: 465 PMLMERLVGLLEFSDTPDI----KSCVAAAIGSAAFAAQDDFIPYFERTMASLSQCLHTT 520
Query: 481 VDHNDYDM 504
D Y++
Sbjct: 521 DDDEGYEL 528
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 580 PTPLRP*MIPVYASRTLSRSSPKYK 506
P L+ IP YA R + R S KYK
Sbjct: 420 PRKLKSGFIPPYAKRVVPRLSAKYK 444
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Frame = -3
Query: 346 HLNSPITKL------LSHHNRVPSYFSRRDRYHQSI 257
HLN P + LSHHN + FS R+H I
Sbjct: 291 HLNDPFPSVDLQSNELSHHNVRTTLFSDDSRFHSKI 326
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 9.2
Identities = 24/95 (25%), Positives = 41/95 (43%)
Frame = -3
Query: 754 SSMGSTCAPNALVKSPMSPDMTAIWASVRSSSFAT*IMKLTIAGTCGSTIAMSGRT*EPT 575
SS S+ + ++LV S S +A ++ SSS ++ + + + S+ S R+ T
Sbjct: 117 SSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRT 176
Query: 574 PLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
+ RT S S Y+P Y + HY
Sbjct: 177 T---------SHRTTSHKSSSYRPTVFPYTTISHY 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,976
Number of Sequences: 5004
Number of extensions: 63126
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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