Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0775
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0648 + 16563147-16565557,16565655-16565850 93 2e-19
12_02_0820 + 23437811-23440230,23440336-23440534 86 3e-17
03_02_0662 - 10250235-10250433,10250692-10253105 84 1e-16
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 35 0.063
08_02_1136 - 24614236-24615207 29 3.1
06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352 29 3.1
12_02_0551 + 20332167-20332556 29 5.5
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 28 7.2
05_06_0018 + 24966721-24968856 28 7.2
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 28 7.2
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 28 9.6
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 GLTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKY 435
G+ GDICRAL++K+ P+CD I+ +LL++L + ++RSVKP I S FGDIAL+IG +F KY
Sbjct: 670 GVVGDICRALEDKILPFCDGIMTVLLKDLSNSMLNRSVKPPIFSCFGDIALAIGDNFEKY 729
Query: 436 FDVVMQMLLQASN--AQVDHNDYDMV 507
M ML A+ A +DH D DMV
Sbjct: 730 LPYAMPMLQGAAELLAVLDHTDEDMV 755
Score = 62.5 bits (145), Expect = 4e-10
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = +2
Query: 11 VLKKVTPDDAPQI----SDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLK 178
+++K++ DA I +D +M L VFA ++ +V E+A++A+ L G +F+K
Sbjct: 587 IIQKLSSSDAKSIIAQTADQLMFLFLHVFACHSS---TVHEEAMLAIGALAYATGTDFVK 643
Query: 179 YMDTFKKYLYTGLKNHQEYQVC 244
YM F KYL GL+N++EYQVC
Sbjct: 644 YMPEFFKYLEAGLQNYEEYQVC 665
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +3
Query: 534 VLEAYTGIIQGLKGVGSQVRPDIAIVEPHVPAIVNFMIQVANEEDRTDAQMAVISGLMGD 713
+ EAY+GI+QG+KG +Q ++ P+ ++ F V + R ++ ++GD
Sbjct: 765 IFEAYSGILQGIKGAKAQ------LMIPYASHLLQFTEAVYKDRSRDESVTKAAVAVLGD 818
Query: 714 LTNAFGA 734
L + G+
Sbjct: 819 LADTLGS 825
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = +1
Query: 256 GLTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKY 435
G+ GD+CRAL++K+ PYCD I+ LL++L +HRSVKP I S FGDIAL+IG +F KY
Sbjct: 672 GVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKY 731
Query: 436 FDVVMQMLLQASN 474
M ML A++
Sbjct: 732 LIYAMPMLQSAAD 744
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +2
Query: 44 QISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYLYTGLKN 223
Q +D +M L VFA + +V E+A++A+ L G F KYM F +YL GL+N
Sbjct: 604 QYADQMMELFLRVFAC---RNATVHEEAMLAIGALAYAAGPNFSKYMPQFYQYLEMGLQN 660
Query: 224 HQEYQVC 244
+EYQVC
Sbjct: 661 FEEYQVC 667
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +3
Query: 534 VLEAYTGIIQGLKGVGSQVRPDIAIVEPHVPAIVNFMIQVANEEDRTDAQMAVISGLMGD 713
+LEAY+GI+QG K P ++ + P I+NF+ + N +D D M G++GD
Sbjct: 767 ILEAYSGILQGFKS-----SPKTQLLMQYAPNILNFLDALYNGKDMDDTVMKTAIGVLGD 821
Query: 714 LTNAFGAHVLPMLD 755
L + G H P+++
Sbjct: 822 LADTLGVHAGPLIN 835
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 GLTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKY 435
G+ GDIC AL +K+ PYCD I+ LL++L P +HRSVKP ILS GDIAL++G F KY
Sbjct: 670 GVVGDICHALDDKVLPYCDGIMSTLLKDLSSPELHRSVKPPILSCIGDIALTMGEHFEKY 729
Query: 436 FDVVMQMLLQASNA--QVDHNDYDMV 507
M ML A+ ++D D D +
Sbjct: 730 VPYTMPMLQGAAELCFRMDAPDDDSI 755
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/65 (43%), Positives = 39/65 (60%)
Frame = +2
Query: 50 SDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYLYTGLKNHQ 229
+D +M L VF+ N+ +V E+A++A+ L G EF+KYM F KYL GL+N
Sbjct: 604 ADQMMVLFLRVFSCNSS---NVHEEAMLAIGALAYATGPEFVKYMPEFHKYLEMGLQNFG 660
Query: 230 EYQVC 244
YQVC
Sbjct: 661 AYQVC 665
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 531 SVLEAYTGIIQGLKGVGSQVRPDIAIVEPHVPAIVNFMIQVANEE-DRTDAQMAVISGLM 707
S+ EAY+GI+QG K S+ ++ P+ I F+ V + R ++ ++
Sbjct: 764 SIFEAYSGILQGFKNSKSE------LMVPYAGNIFQFVELVLKDNLLRNESVTKAGVAMV 817
Query: 708 GDLTNAFGAHV 740
GDL +A G ++
Sbjct: 818 GDLADALGPNI 828
>07_03_0997 - 23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 35.1 bits (77), Expect = 0.063
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +1
Query: 265 GDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDV 444
G + + K P+ DE+ V + LG + I +F DIA KY+D
Sbjct: 872 GTLIKTFKASFLPFFDELSVYITPMLGKDKTAEERRIAIC-IFDDIAEQCRESALKYYDT 930
Query: 445 VMQMLLQASN 474
+ LL+ASN
Sbjct: 931 YLPFLLEASN 940
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/66 (36%), Positives = 33/66 (50%)
Frame = +2
Query: 26 TPDDAPQISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYL 205
TP+ D I+T LL + + GK VQE AL A++++ + E F KY D YL
Sbjct: 501 TPEILTPYLDGIVTKLLVLLQN--GKQ-MVQEGALTALASVADSSQEHFKKYYDAVMPYL 557
Query: 206 YTGLKN 223
L N
Sbjct: 558 KAILMN 563
>08_02_1136 - 24614236-24615207
Length = 323
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 68 ALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYLYTGLKNHQE 232
ALL S+A A S +DA +T V EEF+K L GL+ +E
Sbjct: 48 ALLRTSTSSASAAASRAKDAADQSTTAAAVAAEEFVKIETINVSELLAGLEEEEE 102
>06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352
Length = 563
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +1
Query: 367 VKPEILSV-FGDI--ALSIGSDF--GKYFDVVMQMLLQASNAQVDHNDYDMVYIWVN-SA 528
+KP I ++ +GD A+S +D K + +++LL+ S AQ++H YD I +N S
Sbjct: 290 LKPSIEALRYGDAKDAISQEADMLLEKLREEAVRLLLKFSEAQINHESYDNETIVLNGSV 349
Query: 529 KAFWKHTLESFKAL 570
+F ++T+ K L
Sbjct: 350 LSFPQYTMGVIKLL 363
>12_02_0551 + 20332167-20332556
Length = 129
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 763 RLVSSMGSTCAPNALVKSPMSPDMTAIWASVRSSSFA 653
R+VSS+ + A +A ++P +P + WAS + +A
Sbjct: 31 RVVSSLAAAAASSAWYRAPEAPPVPRPWASQKGDVYA 67
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 660 EEDRTDAQMAVISGLMGDLTNAFGAHVLPML 752
EE A + SGL+ D++ FG HV+P L
Sbjct: 180 EEGHAGAYHVLESGLLDDVSVIFGLHVIPNL 210
>05_06_0018 + 24966721-24968856
Length = 711
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 265 GDICRALKNKMAPYCDEIIVLLLENLGDPS 354
GD+ R + K++ YC ++ + E L DPS
Sbjct: 548 GDVNRVVATKLSNYCAYLVAFVPEMLPDPS 577
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 113 VQEDALMAVSTLVEVLGEEFLKYMDTFKKYLYTGLKN 223
VQE AL A+++ + E F KY D YL + L N
Sbjct: 457 VQEGALTALASAADSSQEHFQKYYDAVMPYLKSILMN 493
>03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 615 PHVPAIVNFMIQVANEEDRTDAQMAVISGLMGDLTNAFGAHVLPML 752
P VP ++N QV + +D V++ + L + +G + P+L
Sbjct: 897 PLVPDVINAFAQVVVSPNESDEVKTVVAKAVSHLISVYGQQMQPIL 942
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,360,359
Number of Sequences: 37544
Number of extensions: 395438
Number of successful extensions: 1017
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -