Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0775
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 98   8e-21
SB_35388| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_40619| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_51606| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_25571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_59406| Best HMM Match : PadR (HMM E-Value=9)                        28   7.4  
SB_42180| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_30305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 28   9.8  

>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 47/82 (57%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
 Frame = +2

Query: 11  VLKKVTPDDAPQISDTIMTALLTVFASNA-GKAGSVQEDALMAVSTLVEVLGEEFLKYMD 187
           VL+K+ P DA QI++++MTALL +F ++A G    VQEDALMAV TLVEV+G  F++YM+
Sbjct: 484 VLRKINPPDAVQIAESVMTALLQMFGASAQGGTSGVQEDALMAVGTLVEVIGINFMQYME 543

Query: 188 TFKKYLYTGLKNHQEYQVCIAA 253
           +F  +L  GLKN  EYQVC AA
Sbjct: 544 SFMPFLEVGLKNKSEYQVCTAA 565



 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 46/84 (54%), Positives = 56/84 (66%)
 Frame = +1

Query: 256 GLTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKY 435
           GL GDI R L   +  Y D I+ +L+EN  D ++HRSVKP ILSVFGDIAL+ G  F KY
Sbjct: 567 GLVGDIARGLGVSITQYSDRIMQILMENCHDETVHRSVKPHILSVFGDIALATGPHFKKY 626

Query: 436 FDVVMQMLLQASNAQVDHNDYDMV 507
            DVV+  L QA+  QV   DYDM+
Sbjct: 627 LDVVIATLTQATQVQVVKTDYDMI 650



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +3

Query: 531 SVLEAYTGIIQGLKGVGSQVRP 596
           S LEAYTGIIQGLKG   +  P
Sbjct: 659 SCLEAYTGIIQGLKGDAEKPNP 680


>SB_35388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++ +   RTL+R   K  PYH    PL  Y
Sbjct: 21  TPLKKSLVDLTWIRTLARLLEKRSPYHGAIAPLSRY 56


>SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL   ++ +   RTL+R   K  PYH    PL  Y
Sbjct: 33  TPLEKSLVDLTWIRTLARLLEKRSPYHRAIAPLSRY 68


>SB_40619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++     RTL+R   K  PYH    PL  Y
Sbjct: 45  TPLKKSLVDFTWIRTLARLLEKRSPYHGAIVPLSRY 80


>SB_51606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++ +   RTL+R   K  PY+    PL  Y
Sbjct: 45  TPLKKSLVYLTCFRTLARLLEKRSPYYCAIAPLSRY 80


>SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++ +   RTL+R   K  PYH    PL  Y
Sbjct: 69  TPLKKSLVDLTWIRTLARLLEKRCPYHWAIAPLSRY 104


>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 445 RHQNIFQNRYQYSKQCLQIQIIFQASLIGELMDHLNS 335
           RH N+ Q  Y+    C +I ++ + +  G+L+D++NS
Sbjct: 109 RHHNVIQ-LYETFHTCHKIFLVMEYAAKGDLLDYINS 144


>SB_25571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++ +   RTL+R   K  PYH    PL  Y
Sbjct: 45  TPLKKSLVYLTWIRTLARLLEKRIPYHCAIAPLSRY 80


>SB_59406| Best HMM Match : PadR (HMM E-Value=9)
          Length = 115

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++ +   RTL+    K  PYH    PL  Y
Sbjct: 33  TPLKKSLVDLTWIRTLALLHEKRSPYHGATAPLSRY 68


>SB_42180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++     RTL+R   K  PYH    PL  Y
Sbjct: 21  TPLKKSLVDFTWIRTLARLLEKRSPYHLAIAPLLRY 56


>SB_30305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 577 TPLRP*MIPVYASRTLSRSSPKYKPYHSRYGPLEHY 470
           TPL+  ++ +   RTL+    K  PYH    PL  Y
Sbjct: 45  TPLKKSLVDLTWIRTLALLHEKRSPYHGATAPLSRY 80


>SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 73  VNCICK*CWKSRQCSGGCSDGCFYSC 150
           +NCICK  W S + +  C   C+  C
Sbjct: 40  LNCICKYVWNSIRFNRTCPKVCYREC 65


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
 Frame = +2

Query: 47  ISDTIMTALLTVFAS---NA-GKAGSVQEDALMAVSTLVEVLGE--EFLKYMDTF 193
           I+  I+  ++TVF +   NA  KAG+V E+ L ++ T+    GE  E+++Y D+F
Sbjct: 451 IAGMIIGKVMTVFTNKELNAYAKAGAVAEEVLSSIRTVAAFGGEGKEYIRY-DSF 504


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,632,706
Number of Sequences: 59808
Number of extensions: 469987
Number of successful extensions: 1350
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)