Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0775
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 68 9e-12
Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical pr... 35 0.075
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 35 0.075
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 30 1.6
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 30 1.6
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 29 3.7
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr... 28 6.5
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei... 28 6.5
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 67.7 bits (158), Expect = 9e-12
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 VLKKVTPDDAPQISDTIMTALLTVF-ASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMD 187
V +K+ P D P + + IM L + + A ++ +V E+AL+AV+ L E LG+ FL YM+
Sbjct: 599 VTRKMQPADIPAVGEHIMNGLYQIMNRAAATRSNAVMEEALLAVACLAEHLGKGFLSYMN 658
Query: 188 TFKKYLYTGLKNHQEYQVCIAA 253
K YL GL N E QVC AA
Sbjct: 659 VLKPYLLEGLSNTDETQVCAAA 680
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 GLTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKY 435
GL D+ RAL+ ++ P+ DE+I L+ L P + R+VK I+ F DIA++I + F +Y
Sbjct: 682 GLVTDLSRALEAEIMPFMDELIQKLILCLQSPRLDRNVKVVIIGTFADIAMAIEAHFERY 741
Query: 436 FDVVMQMLLQASNAQV--DHNDYDMV 507
V+ +L A NA V D ND D V
Sbjct: 742 VGSVVPILNNAQNAAVVTDPNDDDQV 767
Score = 35.1 bits (77), Expect = 0.057
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 537 LEAYTGIIQGLKGVGSQVRPDIAIVEPHVPAIVNFMIQVANEE--DRTDAQMAVISGLMG 710
L +YTGIIQGLK + ++ V IV + ++++ E ++A +A +G++G
Sbjct: 778 LNSYTGIIQGLKAIPDTTAAR-NMINVFVEPIVQLITRISSMEPVPPSEALIATTAGIIG 836
Query: 711 DLTNAFGAHVL 743
DL + ++
Sbjct: 837 DLVQLYEGDII 847
>Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical
protein R06A4.4b protein.
Length = 419
Score = 34.7 bits (76), Expect = 0.075
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +1
Query: 259 LTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYF 438
L GD+ +A ++ P I L +NL DPS SV + G++AL +G ++
Sbjct: 218 LLGDLTKACPERVLPQSSNFIFFLAQNL-DPS-KISVCNNAIWALGELALKMGPAMKQFI 275
Query: 439 DVVMQMLLQASNAQ 480
+++ L+ N+Q
Sbjct: 276 GPIIEPLIVVINSQ 289
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 34.7 bits (76), Expect = 0.075
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +1
Query: 259 LTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYF 438
L GD+ +A ++ P I L +NL DPS SV + G++AL +G ++
Sbjct: 682 LLGDLTKACPERVLPQSSNFIFFLAQNL-DPS-KISVCNNAIWALGELALKMGPAMKQFI 739
Query: 439 DVVMQMLLQASNAQ 480
+++ L+ N+Q
Sbjct: 740 GPIIEPLIVVINSQ 753
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 283 LKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLL 462
++ APY I ++ + + SVK ++ V D+ +IG+DF KY ++ LL
Sbjct: 1027 IRKHAAPYMPAIFTIIADAWKEDI---SVKMVVIEVLTDMGTAIGNDFSKYTGELIPYLL 1083
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 283 LKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLL 462
++ APY I ++ + + SVK ++ V D+ +IG+DF KY ++ LL
Sbjct: 1027 IRKHAAPYMPAIFTIIADAWKEDI---SVKMVVIEVLTDMGTAIGNDFSKYTGELIPYLL 1083
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 313 EIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQVDHN 492
EI+ LL + + D +I ++S + +G+DF + VVM +L+A+ + D N
Sbjct: 574 EILNLLGDGMKDLAIDDPQYSYMISSWTRFCSILGADFAPFLPVVMDPVLRAARYRPDFN 633
Query: 493 DYD 501
++
Sbjct: 634 IFN 636
>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
protein F22E10.1 protein.
Length = 1318
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 62 MTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEE 169
M++ + + GKAGS+ E++LM V T+ G+E
Sbjct: 260 MSSFTSKELAGVGKAGSIAEESLMGVRTVQAFNGQE 295
>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
protein F22E10.3 protein.
Length = 1327
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 38 APQISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEE 169
A Q++ T + L+ V GKAGS+ E++LM V T+ G+E
Sbjct: 269 ARQMTSTTIKELIGV-----GKAGSIAEESLMGVRTVQAFNGQE 307
>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
related (146.8 kD)(pgp-14) protein.
Length = 1327
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 38 APQISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEE 169
A Q++ T + L+ V GKAGS+ E++LM V T+ G+E
Sbjct: 269 ARQMTSTTIKELIGV-----GKAGSIAEESLMGVRTVQAFNGQE 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,796,299
Number of Sequences: 27780
Number of extensions: 352735
Number of successful extensions: 988
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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