Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0775
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53480.1 68418.m06646 importin beta-2, putative similar to im...    89   4e-18
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    36   0.040
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    32   0.37 
At3g46300.1 68416.m05011 hypothetical protein                          30   1.5  
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-...    30   2.0  
At5g64480.1 68418.m08101 expressed protein                             29   3.5  
At4g04930.1 68417.m00717 fatty acid desaturase family protein si...    29   4.6  
At5g59700.1 68418.m07484 protein kinase, putative similar to rec...    28   6.0  
At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family pr...    28   6.0  

>At5g53480.1 68418.m06646 importin beta-2, putative similar to
           importin-beta2 [Oryza sativa (japonica cultivar-group)]
           GI:3983665; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 870

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 40/72 (55%), Positives = 52/72 (72%)
 Frame = +1

Query: 256 GLTGDICRALKNKMAPYCDEIIVLLLENLGDPSIHRSVKPEILSVFGDIALSIGSDFGKY 435
           G+ GD+CRAL++K+ PYCD I+  LL++L    +HRSVKP I S FGDIAL+IG DF KY
Sbjct: 670 GVVGDVCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEDFDKY 729

Query: 436 FDVVMQMLLQAS 471
           +   M ML  A+
Sbjct: 730 WRYSMPMLQSAA 741



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/67 (40%), Positives = 37/67 (55%)
 Frame = +2

Query: 44  QISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYLYTGLKN 223
           + +D +M   L VF   +  A    E+A++A+  L    G  F KYM  F KYL  GL+N
Sbjct: 602 EYADQMMGLFLRVFGCRSATA---HEEAMLAIGALAYAAGPNFAKYMPEFYKYLEMGLQN 658

Query: 224 HQEYQVC 244
            +EYQVC
Sbjct: 659 FEEYQVC 665



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = +3

Query: 534 VLEAYTGIIQGLKGVGSQVRPDIAIVEPHVPAIVNFMIQVANEEDRTDAQMAVISGLMGD 713
           +LEAY+GI QG K   +  +  + I  P  P I+ F+  +  E+D  +  M    G++GD
Sbjct: 765 ILEAYSGIFQGFK---NSAKTQLLI--PFAPHILQFLDSIYMEKDMDEVVMKTAIGVLGD 819

Query: 714 LTNAFGAHV 740
           L +  G+HV
Sbjct: 820 LADTLGSHV 828


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 24/66 (36%), Positives = 35/66 (53%)
 Frame = +2

Query: 26  TPDDAPQISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYL 205
           TP+      D +++ LL +  +  GK   VQE AL A++++ +   E F KY DT   YL
Sbjct: 494 TPEILSPYLDGVVSKLLVLLQN--GKQ-MVQEGALTALASVADSSQEHFQKYYDTVMPYL 550

Query: 206 YTGLKN 223
            T L N
Sbjct: 551 KTILMN 556


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 98   GKAGSVQEDALMAVSTLVEVLGEEFLKYMDTFKKYLYTGLKNHQEYQ 238
            GK   +++DA+ A+  L   LGE+F  ++++  K L      H+E++
Sbjct: 1092 GKNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFE 1138


>At3g46300.1 68416.m05011 hypothetical protein
          Length = 141

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 662 FVRNLNHEVNDRRHVRLDDSDVRS-YLRTYTF 570
           FVR++NH+ +  R   +D    R  YLR+YTF
Sbjct: 38  FVRSINHDGSQHRTTVVDSISCRQMYLRSYTF 69


>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
           Zea mays, EMBL:X58573
          Length = 235

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 161 GEEFLKYMDTFKKYLYTGLK 220
           G+E LKY DTF K +Y  LK
Sbjct: 120 GDELLKYTDTFVKTMYVSLK 139


>At5g64480.1 68418.m08101 expressed protein 
          Length = 184

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 41  PQISDTIMT--ALLTVFASNAGKAGSVQEDALMAVSTLVEVLGEEFLKYMD 187
           P+    IMT   L T  A   GKA +V E    A+    E+L  EF ++MD
Sbjct: 53  PKRKKKIMTDSELATDLAREIGKANTVAEQRREAMKKSGEILWAEFCRHMD 103


>At4g04930.1 68417.m00717 fatty acid desaturase family protein
           similar to D. melanogaster Des-1 protein, GenBank
           accession number X94180; contains Pfam profile PF00487
           Fatty acid desaturase domain
          Length = 332

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 358 HRSVKPEILSVFGDIALSIGSDFGKYFDVVMQMLLQASNAQVDHN 492
           H S + +ILS +  I    G D   +  + + ++LQ S A + HN
Sbjct: 33  HASRRRQILSCYPQIRQLFGPDPWAFLKITLVVILQLSTAAILHN 77


>At5g59700.1 68418.m07484 protein kinase, putative similar to
           receptor-like protein kinase [Catharanthus roseus]
           gi|1644291|emb|CAA97692
          Length = 829

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +1

Query: 331 LENLGDPSIHRSVKPEILSVFGDIALSIGSDFG----KYFDVV--MQMLLQASNAQVDHN 492
           LE++ DPS+   ++P+ L  FG+      +D+G       DV+  ++  LQ   A VD +
Sbjct: 707 LEHIIDPSLRGKIRPDSLRKFGETGEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVDGD 766

Query: 493 DYD 501
             D
Sbjct: 767 PED 769


>At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 686

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 5   IRVLKKVTPDDAPQISDTIMTALLTVFASNAGKAGSVQEDALMAVSTLVEVLGE 166
           +  L K+   D P+I +  M  ++ +    AGK   V ED    +  +VEVL +
Sbjct: 418 VESLMKILRSDDPRIQENAMAGIMNLSKDIAGKTRIVGEDG-GGLRLIVEVLND 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,721,320
Number of Sequences: 28952
Number of extensions: 323451
Number of successful extensions: 957
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)