Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0774
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   2.2  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   2.9  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    26   3.8  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   6.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   6.7  

>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 303 VEKSMPSIYMPPEEMYSETRQYVLRRADSV 392
           + +S+P++  PP + +SET  Y     DS+
Sbjct: 227 IHESLPALQNPPIQSHSETDLYADEELDSI 256


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 103 IPIVVSGIGVTEKLYFKIRESNPLF 177
           IP++ SG+    K+   +R+SNP+F
Sbjct: 263 IPLMASGLLEAHKVQSIVRDSNPMF 287


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 299 IQRLAEKLVQLYNRISRS*TTGSASCMPVARDFSPRDIDQ 180
           ++R  E L+Q Y++  R        C+P + D    D +Q
Sbjct: 18  VERFRESLIQFYDKTKRILPWRKKECIPPSEDSPLEDWEQ 57


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 297 DVVEKSMPSIYMPPEEMYSETRQYVLR 377
           D  + ++  + +PPEE Y+E    VLR
Sbjct: 354 DGKKSAVRRVVLPPEEAYAEATSVVLR 380


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 297 PATCRETCPVVQSDFQELNHRE 232
           P    E CP+ Q  FQ + H E
Sbjct: 512 PIAASEPCPICQEKFQSVWHEE 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,072
Number of Sequences: 5004
Number of extensions: 49448
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)