Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0774
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)                  33   0.11 
SB_50660| Best HMM Match : DUF479 (HMM E-Value=1.6)                    29   3.0  
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)                    28   5.3  
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)                 28   5.3  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)         28   5.3  
SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)                   27   6.9  
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)                       27   6.9  
SB_56342| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   9.2  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  

>SB_50433| Best HMM Match : MFAP1_C (HMM E-Value=0.24)
          Length = 536

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +1

Query: 49  KTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQL 228
           +T QP++   + V +   IP+V + +      Y   RE N L + S +  E S  T I+ 
Sbjct: 16  ETLQPSLQEQDFVRKAGDIPVVKTAVEKITSFYHSARERNHLTKVSFAAAELSFWTAIKT 75

Query: 229 ALPVVQLL 252
           +     LL
Sbjct: 76  SQFAYSLL 83


>SB_50660| Best HMM Match : DUF479 (HMM E-Value=1.6)
          Length = 730

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 249 PGNPIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYV 371
           P  P++ ++K   +S+DV+    P +Y   E      R YV
Sbjct: 260 PAQPVINIEKSKRRSIDVMPSEEPPLYNAGERCGPPPRTYV 300


>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
          Length = 626

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 43  MTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSL 210
           +TK  + + P + V SR+ +   + +   +T+K   KI  + P+   S+ LG K L
Sbjct: 140 LTKLKKGSSPVIGVASRLGNKKEIDANGELTDKELAKIETAKPMTSASLKLGNKLL 195


>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
          Length = 335

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 483 RICRRW*AHGRERSRWPHSSANPRQLCL 400
           ++CRRW   G++RS W      P  L L
Sbjct: 51  KVCRRWYHLGKDRSLWKAVDLRPWPLAL 78


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 213 DRHTASTPGGSTPGNPIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQY 368
           D    S  G  TPG   ++ D  LC + D VE S  S+  P   +  +T +Y
Sbjct: 739 DIRVYSNKGLVTPGKQTLEQDSELCTNND-VESSGSSLGQPNSPLPGQTEKY 789


>SB_1960| Best HMM Match : Transposase_21 (HMM E-Value=8.1e-05)
          Length = 350

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 375 GARIDASLSTSPLEAYKLKAYSSRPHPATC 286
           G ++  SLST P + YK+K  +SR     C
Sbjct: 160 GKQVSQSLSTGPSQHYKIKMAASRKFCVEC 189


>SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)
          Length = 639

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 411 QLCLAASRNPHVGARIDASLSTSPLEAYKLKAYSSRP 301
           Q C   +RN    A    SLS +P E Y L  Y   P
Sbjct: 264 QFCKNTARNNGTSATSTLSLSVTPSEEYTLSNYEQIP 300


>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
          Length = 1019

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 462 AHGRERSRWPHSSANPRQLCLAASRNPHVGARIDASLSTSPLEAYKLKAYSSR 304
           A   + SR PHS +       A SRNPH  +R   S S SP    ++    SR
Sbjct: 712 ARNVQDSRNPHSESRVSD---AESRNPHAESRNPRSESRSPRSESRIPYADSR 761


>SB_56342| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 651

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +3

Query: 393 TRLGTAVLDSRMNAATATVLDRALTTADKY---VDKYLP 500
           TR+G AVLD+R+ A       + L+T + Y   +DK++P
Sbjct: 321 TRVGVAVLDNRLYALGGFDGHKRLSTVEFYNPVLDKWIP 359


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 497 EVLVDVFVGGGERTVENGRGGRIHPRIQDSCA*PRHGIRTSE 372
           ++ +D   G   + V+ GRG ++  RI  + + PR G+  ++
Sbjct: 760 QIAIDTQDGMPPKVVQQGRGQQLEGRIVTASSQPREGVHLNQ 801


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,423,730
Number of Sequences: 59808
Number of extensions: 410248
Number of successful extensions: 1346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)