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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0774
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical pr...    29   2.6  
L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protei...    29   2.6  
L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protei...    29   2.6  
AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    28   3.4  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical p...    27   8.0  
AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical...    27   8.0  

>U29082-7|AAA68404.3|  319|Caenorhabditis elegans Hypothetical
           protein C14F5.4 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 52  TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 222
           TN+ A   L     V S    VSG   + +  K YF  ++S+PL +  + LG  ++A  I
Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186

Query: 223 QLAL 234
            + +
Sbjct: 187 NIPM 190


>L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protein
           1.2, isoform b protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
 Frame = -3

Query: 384 PHVGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSDF-----------QELNH 238
           P V + +  S S+S L+   L++Y  RP P +     P  +  F           QEL  
Sbjct: 119 PQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELME 178

Query: 237 REC*LYAGR*GLLTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDR 106
           +     A +  +   GHRP+     L +        +N+ H +R
Sbjct: 179 QRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 221


>L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protein
           1.2, isoform a protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
 Frame = -3

Query: 384 PHVGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSDF-----------QELNH 238
           P V + +  S S+S L+   L++Y  RP P +     P  +  F           QEL  
Sbjct: 293 PQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELME 352

Query: 237 REC*LYAGR*GLLTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDR 106
           +     A +  +   GHRP+     L +        +N+ H +R
Sbjct: 353 QRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 395


>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 249 PGNPIVQLDKFLCKSLDVVEKSM-PSIYMPPEEMYSETRQYVLRRA 383
           P N  +  + F+ K  +++E  + P I + P+E+   TR Y+ R+A
Sbjct: 87  PANESLSNETFIFKLAELLEGPLKPFIVVSPDEIIKVTRDYLERKA 132


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
            K10D2.1a protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 91   RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 201
            R+ S+P++   IGVTE   + + E+  L  W++ LG+
Sbjct: 984  RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 375  RRADSVTRLGTAVLDSRMNAATATVLDRALTTADKYVDKYL 497
            RR D     G A+ +S  N  T ++LD  L +     D Y+
Sbjct: 1839 RRLDKPFDCGWAISNSNGNTVTLSILDHNLKSTPNCTDSYI 1879


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 375  RRADSVTRLGTAVLDSRMNAATATVLDRALTTADKYVDKYL 497
            RR D     G A+ +S  N  T ++LD  L +     D Y+
Sbjct: 1839 RRLDKPFDCGWAISNSNGNTVTLSILDHNLKSTPNCTDSYI 1879


>Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK637.10 protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 117 HDDRYGCNP*DHFKIRHGW 61
           H D+YG N  D  KI+H W
Sbjct: 90  HADKYGWNGIDQEKIKHDW 108


>AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical
           protein C17H12.9 protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 219 HTASTPGGSTPGNPIVQLDKFLC--KSLDVVEKSMPSIYMPPEEMYS 353
           H+AS+   S+  +  +QLD ++C   +++++E+  P    P E  YS
Sbjct: 399 HSASSSSASSSSSSSMQLDNYICDINTINILEEPSPE---PREIKYS 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,467
Number of Sequences: 27780
Number of extensions: 290411
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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