Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0774
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical pr... 29 2.6
L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protei... 29 2.6
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 29 2.6
AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical ... 28 3.4
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z11115-10|CAA77459.1| 503|Caenorhabditis elegans Hypothetical p... 27 8.0
AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 27 8.0
>U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical
protein C14F5.4 protein.
Length = 319
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 52 TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 222
TN+ A L V S VSG + + K YF ++S+PL + + LG ++A I
Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186
Query: 223 QLAL 234
+ +
Sbjct: 187 NIPM 190
>L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protein
1.2, isoform b protein.
Length = 381
Score = 28.7 bits (61), Expect = 2.6
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Frame = -3
Query: 384 PHVGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSDF-----------QELNH 238
P V + + S S+S L+ L++Y RP P + P + F QEL
Sbjct: 119 PQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELME 178
Query: 237 REC*LYAGR*GLLTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDR 106
+ A + + GHRP+ L + +N+ H +R
Sbjct: 179 QRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 221
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 28.7 bits (61), Expect = 2.6
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Frame = -3
Query: 384 PHVGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSDF-----------QELNH 238
P V + + S S+S L+ L++Y RP P + P + F QEL
Sbjct: 293 PQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELME 352
Query: 237 REC*LYAGR*GLLTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDR 106
+ A + + GHRP+ L + +N+ H +R
Sbjct: 353 QRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 395
>AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical
protein F18A12.7 protein.
Length = 666
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 249 PGNPIVQLDKFLCKSLDVVEKSM-PSIYMPPEEMYSETRQYVLRRA 383
P N + + F+ K +++E + P I + P+E+ TR Y+ R+A
Sbjct: 87 PANESLSNETFIFKLAELLEGPLKPFIVVSPDEIIKVTRDYLERKA 132
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
K10D2.1a protein.
Length = 1223
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 91 RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 201
R+ S+P++ IGVTE + + E+ L W++ LG+
Sbjct: 984 RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 375 RRADSVTRLGTAVLDSRMNAATATVLDRALTTADKYVDKYL 497
RR D G A+ +S N T ++LD L + D Y+
Sbjct: 1839 RRLDKPFDCGWAISNSNGNTVTLSILDHNLKSTPNCTDSYI 1879
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 375 RRADSVTRLGTAVLDSRMNAATATVLDRALTTADKYVDKYL 497
RR D G A+ +S N T ++LD L + D Y+
Sbjct: 1839 RRLDKPFDCGWAISNSNGNTVTLSILDHNLKSTPNCTDSYI 1879
>Z11115-10|CAA77459.1| 503|Caenorhabditis elegans Hypothetical
protein ZK637.10 protein.
Length = 503
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 117 HDDRYGCNP*DHFKIRHGW 61
H D+YG N D KI+H W
Sbjct: 90 HADKYGWNGIDQEKIKHDW 108
>AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical
protein C17H12.9 protein.
Length = 459
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 219 HTASTPGGSTPGNPIVQLDKFLC--KSLDVVEKSMPSIYMPPEEMYS 353
H+AS+ S+ + +QLD ++C +++++E+ P P E YS
Sbjct: 399 HSASSSSASSSSSSSMQLDNYICDINTINILEEPSPE---PREIKYS 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,467
Number of Sequences: 27780
Number of extensions: 290411
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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