BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0774 (515 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical pr... 29 2.6 L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protei... 29 2.6 L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 29 2.6 AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical ... 28 3.4 U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 4.6 Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 8.0 Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 27 8.0 Z11115-10|CAA77459.1| 503|Caenorhabditis elegans Hypothetical p... 27 8.0 AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 27 8.0 >U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical protein C14F5.4 protein. Length = 319 Score = 28.7 bits (61), Expect = 2.6 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +1 Query: 52 TNQPAMPNLEVVSRVASIPIVVSG---IGVTEKLYFKIRESNPLFRWSMSLGEKSLATGI 222 TN+ A L V S VSG + + K YF ++S+PL + + LG ++A I Sbjct: 127 TNRNAKSTLTTKDLVVSYSTAVSGALAMAIGLKTYFAKKQSSPLAQRLVPLGAVAVANAI 186 Query: 223 QLAL 234 + + Sbjct: 187 NIPM 190 >L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protein 1.2, isoform b protein. Length = 381 Score = 28.7 bits (61), Expect = 2.6 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%) Frame = -3 Query: 384 PHVGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSDF-----------QELNH 238 P V + + S S+S L+ L++Y RP P + P + F QEL Sbjct: 119 PQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELME 178 Query: 237 REC*LYAGR*GLLTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDR 106 + A + + GHRP+ L + +N+ H +R Sbjct: 179 QRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 221 >L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein 1.2, isoform a protein. Length = 555 Score = 28.7 bits (61), Expect = 2.6 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%) Frame = -3 Query: 384 PHVGARIDASLSTSPLEAYKLKAYSSRPHPATCRETCPVVQSDF-----------QELNH 238 P V + + S S+S L+ L++Y RP P + P + F QEL Sbjct: 293 PQVSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELME 352 Query: 237 REC*LYAGR*GLLTQGHRPTKQRVGLPYFEVQFFCHSNTGHDDR 106 + A + + GHRP+ L + +N+ H +R Sbjct: 353 QRM-KEAAQQKIHRNGHRPSSSSHPLHHHSTSSSASNNSNHQNR 395 >AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical protein F18A12.7 protein. Length = 666 Score = 28.3 bits (60), Expect = 3.4 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +3 Query: 249 PGNPIVQLDKFLCKSLDVVEKSM-PSIYMPPEEMYSETRQYVLRRA 383 P N + + F+ K +++E + P I + P+E+ TR Y+ R+A Sbjct: 87 PANESLSNETFIFKLAELLEGPLKPFIVVSPDEIIKVTRDYLERKA 132 >U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein K10D2.1a protein. Length = 1223 Score = 27.9 bits (59), Expect = 4.6 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +1 Query: 91 RVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGE 201 R+ S+P++ IGVTE + + E+ L W++ LG+ Sbjct: 984 RLDSLPVL---IGVTEHAAYALTENGRLSTWNLKLGK 1017 >Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein ZC116.3 protein. Length = 3871 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 375 RRADSVTRLGTAVLDSRMNAATATVLDRALTTADKYVDKYL 497 RR D G A+ +S N T ++LD L + D Y+ Sbjct: 1839 RRLDKPFDCGWAISNSNGNTVTLSILDHNLKSTPNCTDSYI 1879 >Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein ZC116.3 protein. Length = 3871 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 375 RRADSVTRLGTAVLDSRMNAATATVLDRALTTADKYVDKYL 497 RR D G A+ +S N T ++LD L + D Y+ Sbjct: 1839 RRLDKPFDCGWAISNSNGNTVTLSILDHNLKSTPNCTDSYI 1879 >Z11115-10|CAA77459.1| 503|Caenorhabditis elegans Hypothetical protein ZK637.10 protein. Length = 503 Score = 27.1 bits (57), Expect = 8.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 117 HDDRYGCNP*DHFKIRHGW 61 H D+YG N D KI+H W Sbjct: 90 HADKYGWNGIDQEKIKHDW 108 >AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical protein C17H12.9 protein. Length = 459 Score = 27.1 bits (57), Expect = 8.0 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = +3 Query: 219 HTASTPGGSTPGNPIVQLDKFLC--KSLDVVEKSMPSIYMPPEEMYS 353 H+AS+ S+ + +QLD ++C +++++E+ P P E YS Sbjct: 399 HSASSSSASSSSSSSMQLDNYICDINTINILEEPSPE---PREIKYS 442 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,131,467 Number of Sequences: 27780 Number of extensions: 290411 Number of successful extensions: 876 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 876 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 996506972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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