Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0773
         (547 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone recepto...    32   1.1  
AB011165-1|BAA25519.2| 2005|Homo sapiens KIAA0593 protein protein.     31   3.5  

>AF117754-1|AAD22032.1| 2174|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP240
            protein.
          Length = 2174

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = +3

Query: 129  NDGMFGARSTPVTGRPGIAVPPGSALRIPLSHSLVPIQGKQISIVNLREIVPFRFCFSQK 308
            N  ++   STP T RP  +V P +   IP +HSL        S++NL     F+ C S  
Sbjct: 1038 NSDLYSPASTPSTCRPLNSVEPATVPSIPEAHSLYVNLILSESVMNL-----FKDCNSDS 1092

Query: 309  SMLCRICH 332
              +C +C+
Sbjct: 1093 CCIC-VCN 1099


>AB011165-1|BAA25519.2| 2005|Homo sapiens KIAA0593 protein protein.
          Length = 2005

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 129  NDGMFGARSTPVTGRPGIAVPPGSALRIPLSHSLVPIQGKQISIVNLREIVPFRFC 296
            N  ++   STP T RP  +V P +   IP +HSL        S++NL +   F  C
Sbjct: 869  NSDLYSPASTPSTCRPLNSVEPATVPSIPEAHSLYVNLILSESVMNLFKDCNFDSC 924


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,110,103
Number of Sequences: 237096
Number of extensions: 1598289
Number of successful extensions: 3896
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3896
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)