Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0773
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen prot...    29   2.2  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    28   3.8  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    25   4.6  
AC006608-5|ABC71834.1|  311|Caenorhabditis elegans Hypothetical ...    25   4.7  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    28   5.0  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      28   5.0  
Z81585-7|CAN86613.1|  127|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -1

Query: 250 CLPCIGTRECDKGILRADPGGTAMPGRPVTGVERAP 143
           C PC G R    G     PG    PGRP TG   AP
Sbjct: 149 CKPCPGGRPGPPGP-PGRPGSDGQPGRPATGGGAAP 183


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 401 ESETWFTEFLARSSFSVGRIFDPVADSAKHALLRETEPKGYDF 273
           +SE +F   L    F+  + F P  D     +LRETE +  DF
Sbjct: 314 DSEVYFILALKTGFFTYFKYFQPSVDQTPSTVLRETELRLRDF 356


>AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen protein
           105 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 238 IGTRECDKGILRADPGGTAMPGRPVTGVERAPNIPSFYKN 119
           + T ECD   ++  PG T  PGRP  G    P +P    N
Sbjct: 82  LDTDECDGCCIQGAPGPTGEPGRP--GRPGKPGVPGMPGN 119


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
           protein Y75B8A.13 protein.
          Length = 1420

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +2

Query: 170 SARHCSAAGIGPQNSFITLSGSYTRQTDFHSKLEGNRTLSVLFLAKEHALQNLPLDQ 340
           S+ H + AG G   S IT++ S + ++   S+   +   S    +++H  Q+LP+DQ
Sbjct: 302 SSEHSTIAGAGEAGS-ITVTASSSEKSPADSQGSASPDESTEEPSQDHTPQDLPMDQ 357


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 25.0 bits (52), Expect(2) = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 310 LFCEKQNRKGTISLKFTMEICLPCIGTRECD 218
           + CE   +K   +L F   I +PC G R CD
Sbjct: 116 MICEGPCKK---ALVFDKTIVIPCCGARMCD 143



 Score = 21.4 bits (43), Expect(2) = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 244 PCIGTRECDKGILRADP 194
           PC+G+  C+  +LR  P
Sbjct: 179 PCMGSLHCEGEVLRNFP 195


>AC006608-5|ABC71834.1|  311|Caenorhabditis elegans Hypothetical
           protein C15F1.5b protein.
          Length = 311

 Score = 25.0 bits (52), Expect(2) = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 310 LFCEKQNRKGTISLKFTMEICLPCIGTRECD 218
           + CE   +K   +L F   I +PC G R CD
Sbjct: 46  MICEGPCKK---ALVFDKTIVIPCCGARMCD 73



 Score = 21.4 bits (43), Expect(2) = 4.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 244 PCIGTRECDKGILRADP 194
           PC+G+  C+  +LR  P
Sbjct: 109 PCMGSLHCEGEVLRNFP 125


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +3

Query: 147 ARSTPVTGRPGIAVPPGSALRIPLSHSLVPIQGKQISIVNLREIVPFRFCFS 302
           A+S P    P    PP SA   P++    P QG+        +   F   F+
Sbjct: 700 AQSAPAKPAPPRPAPPKSARETPVNDPFAPSQGQSTQPAGFADFADFGSAFN 751


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +3

Query: 147 ARSTPVTGRPGIAVPPGSALRIPLSHSLVPIQGKQISIVNLREIVPFRFCFS 302
           A+S P    P    PP SA   P++    P QG+        +   F   F+
Sbjct: 745 AQSAPAKPAPPRPAPPKSARETPVNDPFAPSQGQSTQPAGFADFADFGSAFN 796


>Z81585-7|CAN86613.1|  127|Caenorhabditis elegans Hypothetical
           protein T05E12.6b protein.
          Length = 127

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
 Frame = -1

Query: 277 ISLKFTMEICLPCIGTRECDKGILRADPGGTAMPGRPVTGV---ERAPNIPSFYKNQFNI 107
           I L FT+ I        EC  G++  D       G    GV       N P  Y   + I
Sbjct: 4   IFLIFTIVIAFSNATIPECSGGVVTFDKPANTTIGTSYPGVFNNSNIQNFPKLYNCDYQI 63

Query: 106 LVPQ 95
            VPQ
Sbjct: 64  NVPQ 67


>Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical
           protein T05E12.6a protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
 Frame = -1

Query: 277 ISLKFTMEICLPCIGTRECDKGILRADPGGTAMPGRPVTGV---ERAPNIPSFYKNQFNI 107
           I L FT+ I        EC  G++  D       G    GV       N P  Y   + I
Sbjct: 4   IFLIFTIVIAFSNATIPECSGGVVTFDKPANTTIGTSYPGVFNNSNIQNFPKLYNCDYQI 63

Query: 106 LVPQ 95
            VPQ
Sbjct: 64  NVPQ 67


>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
           protein ZK617.1c protein.
          Length = 6629

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 212 NSEGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 57
           + E RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 147 SQESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 199


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 212 NSEGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 57
           + E RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 686 SQESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 738


>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical
           protein ZK617.1c protein.
          Length = 6629

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 212 NSEGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 57
           + E RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 147 SQESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 199


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 212 NSEGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 57
           + E RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 686 SQESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 738


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,661,569
Number of Sequences: 27780
Number of extensions: 237181
Number of successful extensions: 793
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)