Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0773
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.29 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.66 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.66 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.66 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 350 GRIFDPVADSAKHALLRETEPKGYDF 273
           G I DP +DS       E E  GYDF
Sbjct: 243 GSILDPSSDSQNEVGFYEVEGIGYDF 268


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 253 ICLPCIGTRECDKGILRADPGGTAMPGRPVTGVERAPNIPSFYKNQFNIL 104
           IC+P I ++ECD+  ++ D     +P   ++G +R   I    K + +++
Sbjct: 36  ICVPEIYSKECDE--MKKDSAVKGIPVSCISGRDRYECIEKVGKKEADVV 83


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 253 ICLPCIGTRECDKGILRADPGGTAMPGRPVTGVERAPNIPSFYKNQFNIL 104
           IC+P I ++ECD+  ++ D     +P   ++G +R   I    K + +++
Sbjct: 36  ICVPEIYSKECDE--MKKDSAVKGIPVSCISGRDRYECIEKVGKKEADVV 83


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 253 ICLPCIGTRECDKGILRADPGGTAMPGRPVTGVERAPNIPSFYKNQFNIL 104
           IC+P I ++ECD+  ++ D     +P   ++G +R   I    K + +++
Sbjct: 36  ICVPEIYSKECDE--MKKDSAVKGIPVSCISGRDRYECIEKVGKKEADVV 83


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 167  GSARHCSAAGIGPQNSFI 220
            G A   SAAG+ P N+ +
Sbjct: 1720 GGAAEASAAGLHPNNTLL 1737


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 167  GSARHCSAAGIGPQNSFI 220
            G A   SAAG+ P N+ +
Sbjct: 1716 GGAAEASAAGLHPNNTLL 1733


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,857
Number of Sequences: 438
Number of extensions: 3224
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)