Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0772
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    57   3e-09
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.3  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.7  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   5.7  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    25   7.6  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    25   7.6  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   7.6  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    25   7.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   7.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   10.0 
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   10.0 

>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 29/46 (63%), Positives = 34/46 (73%)
 Frame = +1

Query: 118 KLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSXKYAL 255
           KL+I  ++L GK VL+RVDFNVPL    ITNN RIV AL + KYAL
Sbjct: 6   KLAITDVDLKGKNVLIRVDFNVPLDGDRITNNARIVGALPTIKYAL 51



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = +3

Query: 267 KSVVLMSHLGRPDGQVNLKYTLKTVAEE 350
           K+V+LMSHLGRP+G    KY+LK VA E
Sbjct: 56  KAVILMSHLGRPNGARVAKYSLKPVAAE 83


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 347 FSDCFEGVLEIYLAIRSTQMRHKYN*FSAFIKA 249
           F +CF+GV  +   I S  +R  YN F   ++A
Sbjct: 332 FENCFKGVKSLEFKIWSRSLRKNYN-FEQLLRA 363


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 615 HIFRLVFQFRLESVFMHLVISPNIPNVKLENICMVFLYKIYSMNETRKTKLIVLTCYFF 439
           H   LV Q    +  +  V+  N PN   E I   FLYK+ +++  + +  ++  C FF
Sbjct: 528 HALTLV-QDAFGNYVLQYVLELNNPN-HTEAIISYFLYKVRALSTQKFSSNVMEKCIFF 584


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   ILSISLHRNLKISRKLPKTESFEE 77
           I + SLHR+   S K+ K  SF+E
Sbjct: 137 ITNFSLHRSFSASGKMEKNNSFKE 160


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 295 PKCDISTTDLAPLSKHIXRNLRQLQCAG 212
           P C  + TD APL +   R++RQ    G
Sbjct: 407 PMCVEAFTDYAPLGRFAVRDMRQTVAVG 434


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 295 PKCDISTTDLAPLSKHIXRNLRQLQCAG 212
           P C  + TD APL +   R++RQ    G
Sbjct: 407 PMCVEAFTDYAPLGRFAVRDMRQTVAVG 434


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 659 SQNKYVIFCHIFKVHTYSGLFSNLD 585
           SQ +Y+     FKVH+YS  F   D
Sbjct: 183 SQERYIPRIFGFKVHSYSATFKKQD 207


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 295 PKCDISTTDLAPLSKHIXRNLRQLQCAG 212
           P C  + TD APL +   R++RQ    G
Sbjct: 407 PMCVEAFTDYAPLGRFAVRDMRQTVAVG 434


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 393 SSR*LEIQEIRFLYREKSNKLKLLILSFLSHSLNRFY 503
           +S+ L++++++ L RE S K     +SF SH+  R+Y
Sbjct: 88  ASKRLQMEDLQQLSRETSRKSLNRRVSFASHARVRWY 124


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 642 YFLSHFQGSHIFRLVFQFRLESVFMHLVISPNIPNVKLENICMVFLYKIYSMN 484
           + +S F  S +FRL+     ++V +H+  S +   V        F  KIY  N
Sbjct: 415 FLISDFLKSTLFRLLLDASKKTVVVHIGSSKDTCVVNFSTPITNFFSKIYKDN 467


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 221 MRWLFVITPSLSGTLKSTRIRTLLPVKLSASIL 123
           M++L + TP      +STR R LL V LS  IL
Sbjct: 426 MKYLQIDTPESKEYPRSTRPRALLIVALSQLIL 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,897
Number of Sequences: 5004
Number of extensions: 50026
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)