Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0772
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0343 - 24234026-24234235,24234254-24234502,24234642-242349...    42   6e-04
01_06_1020 + 33878391-33878582,33879194-33879271,33879363-338795...    40   0.002
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372...    35   0.068
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941...    34   0.12 
04_03_0359 - 14864750-14864998,14865122-14865345,14867358-148674...    28   7.8  

>05_05_0343 -
           24234026-24234235,24234254-24234502,24234642-24234959,
           24235111-24235371,24235457-24235534,24235834-24236262
          Length = 514

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = +1

Query: 58  RQKASKNQKEFNFLLRMALNKLS-IDALNLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAA 231
           RQ AS + +    +  MA   +  + A +L GKRV +R D NVPL +   IT++ R+ AA
Sbjct: 64  RQAASSSSRGTRAVATMAKKSVGDLTAADLEGKRVFVRADLNVPLDDNQNITDDTRVRAA 123

Query: 232 LDSXKYALIK 261
           + + +Y LIK
Sbjct: 124 IPTIQY-LIK 132


>01_06_1020 +
           33878391-33878582,33879194-33879271,33879363-33879524,
           33879789-33880106,33880477-33880671
          Length = 314

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +1

Query: 133 ALNLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAALDSXKYAL 255
           A +L GKRVL+R D NVPL     IT++ R++AA+ + K+ +
Sbjct: 11  AADLEGKRVLLRADLNVPLDASQNITDDTRVIAAIPTIKHLI 52


>02_01_0516 +
           3727742-3727936,3729115-3729192,3729292-3729552,
           3729921-3730238,3730527-3730685,3730768-3730961,
           3731644-3731647
          Length = 402

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 139 NLTGKRVLMRVDFNVPLKEG-VITNNQRIVAALDSXKYALIK 261
           +L GK+V +R D NVPL +   IT++ RI A++ + K+ L K
Sbjct: 14  DLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEK 55



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 255 DKGAKSVVLMSHLGRPDGQVNLKYTLK 335
           +KGAK V+L SHLGRP G V  KY+LK
Sbjct: 54  EKGAK-VILASHLGRPKG-VTPKYSLK 78


>06_03_1062 -
           27293119-27293313,27293390-27293548,27293877-27294194,
           27294535-27294795,27294901-27294978,27295707-27295901
          Length = 401

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 139 NLTGKRVLMRVDFNVPLKEG-VITNNQRIVAALDSXKYALIK 261
           +L GK+V +R D NVPL +   IT++ RI A++ + K+ + K
Sbjct: 14  DLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGK 55



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +3

Query: 258 KGAKSVVLMSHLGRPDGQVNLKYTLK 335
           KGAK V+L SHLGRP G V  KY+LK
Sbjct: 55  KGAK-VILASHLGRPKG-VTPKYSLK 78


>04_03_0359 -
           14864750-14864998,14865122-14865345,14867358-14867475,
           14867586-14867960,14869257-14869673
          Length = 460

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 185 GTLKSTRIRTLLPVKLSASI 126
           G L S R+R LLP+KLSA++
Sbjct: 160 GHLVSKRVRDLLPIKLSANL 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,292
Number of Sequences: 37544
Number of extensions: 252031
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)