Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0772
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12780.1 68416.m01596 phosphoglycerate kinase, putative simil...    38   0.008
At1g56190.1 68414.m06458 phosphoglycerate kinase, putative simil...    37   0.014
At1g79550.2 68414.m09274 phosphoglycerate kinase, putative simil...    36   0.019
At1g79550.1 68414.m09273 phosphoglycerate kinase, putative simil...    36   0.019

>At3g12780.1 68416.m01596 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 481

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +1

Query: 127 IDALNLTGKRVLMRVDFNVPLKEG-VITNNQRIVAALDSXKYAL 255
           + + +L GK+V +R D NVPL +   IT++ RI AA+ + KY +
Sbjct: 85  LTSADLKGKKVFVRADLNVPLDDNQTITDDTRIRAAIPTIKYLI 128


>At1g56190.1 68414.m06458 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 478

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
 Frame = +1

Query: 127 IDALNLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAALDSXKYAL 255
           +++++L GK+V +R D NVPL +   IT++ RI AA+ + K+ +
Sbjct: 82  LNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLI 125


>At1g79550.2 68414.m09274 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 401

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 139 NLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAALDSXKYAL 255
           +L GK V +RVD NVPL +   IT++ RI AA+ + KY +
Sbjct: 14  DLKGKSVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLM 53



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +3

Query: 273 VVLMSHLGRPDGQVNLKYTLK 335
           VVL SHLGRP G V  KY+LK
Sbjct: 59  VVLCSHLGRPKG-VTPKYSLK 78


>At1g79550.1 68414.m09273 phosphoglycerate kinase, putative similar
           to SP|P41758 Phosphoglycerate kinase, chloroplast
           precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
           contains Pfam profile PF00162: phosphoglycerate kinase
          Length = 401

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 139 NLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAALDSXKYAL 255
           +L GK V +RVD NVPL +   IT++ RI AA+ + KY +
Sbjct: 14  DLKGKSVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLM 53



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +3

Query: 273 VVLMSHLGRPDGQVNLKYTLK 335
           VVL SHLGRP G V  KY+LK
Sbjct: 59  VVLCSHLGRPKG-VTPKYSLK 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,773,374
Number of Sequences: 28952
Number of extensions: 234110
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)