Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0771
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.1  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   6.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   6.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 219 VTRKGGLNYWCKSGIGEALAHVFYGQGCKIILASRRKRELERVKQDLI--SRKVCFAEST 392
           +T +G   ++ +S    A+    YG  C+I +  RRK +  R+K+ L    R  C     
Sbjct: 203 LTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEV 262

Query: 393 TGSETRPTEKIRRE 434
             +  R  +K ++E
Sbjct: 263 QCAVKRKEKKAQKE 276


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 362 YQILFNSFEFSFP 324
           Y  LFN FEFS P
Sbjct: 354 YPHLFNFFEFSVP 366


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 139 YIGVPFVVGVTMYGV-INHLLQKKRRSTL 222
           Y G P  VGVTMY + I+ L + K   TL
Sbjct: 60  YGGPPVEVGVTMYVLSISSLSEVKMDFTL 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,198
Number of Sequences: 336
Number of extensions: 4486
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)