Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0771
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   2.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.9  
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    26   6.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.6  

>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 214 STLRGKVVLITGASLVLGRHWLMYFMDRAVKLSLLLGGKENS 339
           S L GK +LITGAS  +G+    + + +  K+ L+L  +  S
Sbjct: 2   SRLDGKTILITGASSGIGKS-TAFEIAKVAKVKLILAARRFS 42


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 493  GFDEDVTGVCGA*KHR*WIRSIC 561
            G D DV  VCGA  H+ ++  +C
Sbjct: 1166 GDDFDVCSVCGAVYHKGYVNEVC 1188


>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 639 LVVAAGNYIPDPVGLVNSRRRSKHVITDTPDPLTVFLGTTN 517
           L+V A   + +PVG+V SR+R   ++       T  L + N
Sbjct: 119 LIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKN 159


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 94  KMNSLMKLQQKNWYTYIGVPFVVGVTMYGVINHLLQKKRRSTLRGKVVLITGASLVLGRH 273
           K N   K++ KN +        +GV      +HLL  K   T+  +  +I   SL   + 
Sbjct: 38  KNNKTQKVEPKNAFKVENQSNDIGVDTVDAFDHLLLDKTLPTIDAETEVIKNTSLSNSKS 97

Query: 274 WL 279
           +L
Sbjct: 98  FL 99


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 518  TPVTSSSNPSLSTKGSASELTHRRSPLSFSPDLLSGSRFRS 396
            TP+TSSS  + ST  ++S + +  +P++ S  L S +   S
Sbjct: 3082 TPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAITS 3122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,202
Number of Sequences: 5004
Number of extensions: 69195
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)