Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0771
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0746 + 19247529-19247723,19247808-19248000,19248145-192482...    33   0.18 
11_04_0393 + 17185845-17186042,17189342-17189534,17190513-171905...    31   0.97 
02_03_0385 + 18396109-18396294,18396344-18396379                       31   1.3  
05_01_0283 - 2198107-2198386,2198641-2199290                           29   2.9  
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452...    29   3.9  
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426     29   5.2  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    29   5.2  

>04_03_0746 +
           19247529-19247723,19247808-19248000,19248145-19248230,
           19248861-19249028,19249445-19249738
          Length = 311

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +1

Query: 193 LLQKKRRSTLRGKVVLITGASLVLGRHWLMYFMDRAVKLSLLLGGKENSKEL 348
           LL       + GKVVLITGAS  +G H    +  R   L+L+   +E+ +E+
Sbjct: 40  LLAAAADDDVAGKVVLITGASSGIGEHLAYEYARRGAYLALVARREESLREV 91


>11_04_0393 +
           17185845-17186042,17189342-17189534,17190513-17190598,
           17191123-17191254,17191930-17192094,17192397-17192687
          Length = 354

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 220 LRGKVVLITGASLVLGRHWLMYFMDRAVKLSL 315
           LRGKVVL+TGAS  +G H +  +  +   ++L
Sbjct: 50  LRGKVVLVTGASSGIGEHLVYEYAKKGACVAL 81


>02_03_0385 + 18396109-18396294,18396344-18396379
          Length = 73

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 208 RRSTLRGKVVLITGASLVLG 267
           R+ +LRGKVVLITGAS  +G
Sbjct: 42  RKESLRGKVVLITGASSGIG 61


>05_01_0283 - 2198107-2198386,2198641-2199290
          Length = 309

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 570 ALSDVDCLPGLQDRVCSFQRPRQEGSHEV-PPSQSGAAMMPTVDTYDRV 713
           ++S  DC  GL   +C    PR E  + V  P+     ++P +D YD++
Sbjct: 114 SISPKDCCNGLLLCLCCKNSPRDESDYVVCNPATQRWIILPEIDDYDQL 162


>04_03_0745 +
           19244089-19244521,19244638-19244723,19245090-19245221,
           19245335-19245499,19245602-19245892
          Length = 368

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 154 FVVGVTMYGVINHLLQKKRRSTLRGKVVLITGASLVLGRHWLMYFMDRAVKLSLL 318
           FV     Y + +  L       + GKVVL+TGAS  +G      +  R  +L+L+
Sbjct: 42  FVPPYLAYRLASSALAAASPEDVAGKVVLVTGASSGIGEQVAYRYARRGARLALV 96


>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
          Length = 284

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 214 STLRGKVVLITGASLVLGRHWLM 282
           S L G+VVL+TGAS  LGR + +
Sbjct: 18  SRLEGRVVLVTGASSGLGREFCL 40


>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
            27985590-27985744,27985956-27986461,27986551-27986703,
            27987146-27987485,27987558-27987822,27987897-27988634,
            27989734-27989779,27989849-27990223,27991511-27991567,
            27991640-27992438
          Length = 1453

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 255  SGIGEALAHVFYGQGCKIILA 317
            SGIG+A A  F G G K+ILA
Sbjct: 1201 SGIGKASAKEFIGNGAKVILA 1221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,651,363
Number of Sequences: 37544
Number of extensions: 467709
Number of successful extensions: 1272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)