Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0771
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14258| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)             44   1e-04
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)             33   0.32 
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.56 
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.56 
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  31   0.99 
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)             31   1.3  
SB_55513| Best HMM Match : Pox_A32 (HMM E-Value=0.056)                 30   1.7  
SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)                     30   1.7  
SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)               29   4.0  
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              29   4.0  
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_52770| Best HMM Match : Pentaxin (HMM E-Value=3.8)                  28   7.0  
SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   7.0  
SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_45917| Best HMM Match : DMAP1 (HMM E-Value=1.7)                     28   9.2  
SB_14597| Best HMM Match : SOUL (HMM E-Value=6.5)                      28   9.2  

>SB_14258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/33 (60%), Positives = 28/33 (84%)
 Frame = +3

Query: 255 SGIGEALAHVFYGQGCKIILASRRKRELERVKQ 353
           SGIGE LA+   G GCK++L++RRK+EL+RVK+
Sbjct: 61  SGIGEFLAYQLAGNGCKLVLSARRKQELDRVKR 93


>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
          Length = 355

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = +3

Query: 255 SGIGEALAHVFYGQGCKIILASRRKRELERVKQDLIS 365
           SGIGE LA+     GCK++L++RR+ ELERVK+  I+
Sbjct: 52  SGIGENLAYELAKFGCKLVLSARRRSELERVKEQCIA 88


>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
          Length = 728

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 166 VTMYGVINHLLQK--KRRSTLRGKVVLITGASLVLGRHWLMYFMDRAVKLSL 315
           V +Y V   L Q    RR +LRG+ VLITGA+  +GR   +    +  KL L
Sbjct: 13  VVVYQVFQALAQFVFPRRKSLRGETVLITGAASGIGRLTALILAKKGCKLVL 64


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 740  VDLHDDLELDSVISIYSRHHCGATLRRRHFMRTLLSWPL 624
            VDLH+DL  D +++   R  CG    RR  +  L +W L
Sbjct: 2029 VDLHNDLVSDYIVNNELRRLCGILALRRGRLMALAAWAL 2067


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 740  VDLHDDLELDSVISIYSRHHCGATLRRRHFMRTLLSWPL 624
            VDLH+DL  D +++   R  CG    RR  +  L +W L
Sbjct: 1753 VDLHNDLVSDYIVNNELRRLCGILALRRGRLMALAAWAL 1791


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 321 RRKR---ELERVKQDLISRKVCFAESTTGSETRPTEKIRRET 437
           +RKR   ELERVKQDL  +K  F+E   G ++  +E   R +
Sbjct: 311 KRKRFLAELERVKQDLSQKKAKFSEDEDGFDSDYSEDSSRSS 352


>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
          Length = 384

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 255 SGIGEALAHVFYGQGCKIILASRRKRELERVKQDL 359
           +GIG+A+A      G K+++ASR + +L++   DL
Sbjct: 26  TGIGKAIAAELLSLGSKVVIASRSEGKLQKAAVDL 60


>SB_55513| Best HMM Match : Pox_A32 (HMM E-Value=0.056)
          Length = 937

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 740 VDLHDDLELDSVISIYSRHHCGATLRRRHFMRTLLSWPL 624
           VDLH+DLE D +++   R  CG+   RR  +  L +  L
Sbjct: 795 VDLHNDLESDYIVNNELRILCGSLALRRGLLMALAAGAL 833


>SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 539 RCF*APQTPVTSSSNPSLSTKGSASELTHRRSPLSFSPDLLSGSRFRS 396
           +C    + P    S+ +  T   + ELTH  SP   S + L   RFRS
Sbjct: 219 KCIGRHRVPNPGESHEAEETSSESFELTHENSPRHISVEDLPKGRFRS 266


>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
          Length = 1617

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 740  VDLHDDLELDSVISIYSRHHCGATLRRRHFMRTLLSWPL 624
            VDLH+DLE D +++   R  CG+   RR  +  L +  L
Sbjct: 1051 VDLHNDLESDYIVNNELRILCGSLALRRGLLMALAAGAL 1089


>SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)
          Length = 608

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 237 LNYWCKSGIGEALAHVFYGQGCKIILASRRKRELERVKQDLI---SRKVCFAESTTGSET 407
           L YWCKSG    +     G G        +K + +R+  +LI   S K+     T  +E 
Sbjct: 311 LAYWCKSGNSHTIPQRSTGHGFVSEFRVIQKDKAKRISDNLILKSSHKLWVVLLTRKTEK 370

Query: 408 RPTEKIR 428
            P +K R
Sbjct: 371 APEDKQR 377


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 226 GKVVLITGASLVLGRHWLMYFMDRAVKLSLL-LGG 327
           G+VVL+TGA   LGR + + F +R   + +  LGG
Sbjct: 10  GRVVLVTGAGNGLGRQYALAFAERGASVVVNDLGG 44


>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 214 STLRGKVVLITGASLVLGRHWLMYFMDRAVKLSL 315
           S   GKVV ITGAS  +G H    F     KL L
Sbjct: 866 SVFNGKVVWITGASSGIGEHLAYEFTKHGSKLVL 899


>SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = -1

Query: 503 SSNPSLSTKGSASELTHRRSPLSFSPDLLSGSRFRSGGRFCKANFPGYQILFNSFEFS 330
           SS+  L   G+ S L H   P   S +  +G  F   GRF             SFE+S
Sbjct: 93  SSDKGLIVSGNESSLRHTAPPGLLSAEESNGRDFAMSGRFVLVTDKDSAAFGQSFEYS 150


>SB_52770| Best HMM Match : Pentaxin (HMM E-Value=3.8)
          Length = 342

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 425 DLLSGSRFRSGGRFCKANFPGYQILFNSFEFSFPPRSKDNFTALSIKY-MSQC 270
           DLL+  +   GG+          +L  S EF FP RS +NF A+ +   +S+C
Sbjct: 164 DLLNNGKLTGGGKL---------VLDPSCEFHFPNRSTENFVAVPLPVDLSEC 207


>SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 884

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 743 NVDLHDDLELDSVISIYSRHHCGATLRRRHFMRTLLSWPLE 621
           N  L DD + D + S   +H  GA + R H      S PLE
Sbjct: 726 NTALSDDCDTDRLKSFVEQHVPGADVIRHHGYEMAFSLPLE 766


>SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 740 VDLHDDLELDSVISIYSRHHCGA-TLRRRHFM 648
           VDLH+DL  D +I+   R  CG+ +LR  H M
Sbjct: 322 VDLHNDLVSDHIINNELRTLCGSLSLRYGHLM 353


>SB_45917| Best HMM Match : DMAP1 (HMM E-Value=1.7)
          Length = 194

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 740 VDLHDDLELDSVISIYSRHHCGA-TLRRRHFM 648
           VDL++DL  D +I+   R  CG+ +LR RH M
Sbjct: 119 VDLYNDLVSDYIINNELRTLCGSLSLRYRHLM 150


>SB_14597| Best HMM Match : SOUL (HMM E-Value=6.5)
          Length = 206

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 740 VDLHDDLELDSVISIYSRHHCGA-TLRRRHFM 648
           VDLH+DL  D +I+   R  CG+ +LR  H M
Sbjct: 60  VDLHNDLVSDHIINNELRTLCGSLSLRYGHLM 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,559,526
Number of Sequences: 59808
Number of extensions: 513198
Number of successful extensions: 1526
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)