Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0771
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SD... 38 0.009
At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SD... 36 0.037
At5g65205.1 68418.m08201 short-chain dehydrogenase/reductase (SD... 33 0.15
At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SD... 33 0.20
At3g47360.1 68416.m05149 short-chain dehydrogenase/reductase (SD... 32 0.35
At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD... 32 0.46
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD... 32 0.46
At1g24470.1 68414.m03082 short-chain dehydrogenase/reductase (SD... 31 1.1
At5g50690.1 68418.m06281 short-chain dehydrogenase/reductase (SD... 29 2.5
At5g50590.1 68418.m06267 short-chain dehydrogenase/reductase (SD... 29 2.5
At5g19200.1 68418.m02286 short-chain dehydrogenase/reductase (SD... 29 3.3
At5g04900.1 68418.m00515 short-chain dehydrogenase/reductase (SD... 29 3.3
At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SD... 29 3.3
At2g26250.1 68415.m03151 beta-ketoacyl-CoA synthase family (FIDD... 29 4.3
At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi... 29 4.3
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi... 28 5.7
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ... 28 7.5
>At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 328
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3
Query: 258 GIGEALAHVFYGQGCKIILASRRKRELERVKQDL 359
GIGE LA F K+IL++R K EL+RVK +L
Sbjct: 54 GIGEILAKQFASLDAKLILSARNKAELDRVKSEL 87
Score = 31.9 bits (69), Expect = 0.46
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 193 LLQKK--RRSTLRGKVVLITGASLVLGRHWLMYFMDRAVKLSLLLGGKENSKELNRI--* 360
L+ KK +R ++GKVV ITGAS +G F KL L N EL+R+
Sbjct: 30 LISKKHVKREAIQGKVVWITGASRGIGEILAKQFASLDAKLIL---SARNKAELDRVKSE 86
Query: 361 YPGKFA 378
GKFA
Sbjct: 87 LKGKFA 92
>At3g47350.1 68416.m05148 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 308
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 216 NVTRKGGLNYWCKSGIGEALAHVFYGQGCKIILASRRKRELERVKQ 353
NVT K L SGIGE +A+ + +G K+ L +RRK LE V +
Sbjct: 43 NVTGKVVLITGASSGIGEHVAYEYAKKGAKLALVARRKDRLEIVAE 88
>At5g65205.1 68418.m08201 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 285
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 252 KSGIGEALAHVFYGQGCKIILASRRKRELERVKQD 356
+ GIG ALA F GC+++ SR ++ + +++D
Sbjct: 18 QGGIGHALAREFSANGCRVVATSRSQKTMTELEKD 52
>At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 279
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 252 KSGIGEALAHVFYGQGCKIILASRRKRELERVKQD 356
+ GIG ALA F +GC+++ SR + + ++QD
Sbjct: 17 QGGIGHALAREFTEKGCRVVATSRSRSTMTDLEQD 51
>At3g47360.1 68416.m05149 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 309
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 216 NVTRKGGLNYWCKSGIGEALAHVFYGQGCKIILASRRKRELERVKQ 353
NV RK L SGIGE +A+ + +G + L +RR+ LE V +
Sbjct: 44 NVARKVVLITGASSGIGEHVAYEYAKKGAYLALVARRRDRLEIVAE 89
>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
family protein contains oxidoreductase, short chain
dehydrogenase/reductase family domain, Pfam:PF00106
Length = 349
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 255 SGIGEALAHVFYGQGCKIILASRRKRELERVKQ 353
SGIGE LA+ + +G + L +RRK LE V +
Sbjct: 57 SGIGEQLAYEYACRGACLALTARRKNRLEEVAE 89
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 130 WYTYIGVPFVVG-VTMYGVINHLLQKKRRSTLRGKVVLITGASLVLGRHWLMYFMDRAVK 306
++T+ G+ F + + + + L GKVVLITGAS +G + R
Sbjct: 14 FFTFFGLCFFLPPFYFFKFLQSIFSTIFSENLYGKVVLITGASSGIGEQLAYEYACRGAC 73
Query: 307 LSLLLGGKENSKELNRI 357
L+L K +E+ I
Sbjct: 74 LALTARRKNRLEEVAEI 90
>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 349
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 255 SGIGEALAHVFYGQGCKIILASRRKRELERVKQ 353
SGIGE LA+ + +G + L +RRK LE V +
Sbjct: 57 SGIGEQLAYEYACRGACLALTARRKNRLEEVAE 89
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 130 WYTYIGVPFVVG-VTMYGVINHLLQKKRRSTLRGKVVLITGASLVLGRHWLMYFMDRAVK 306
++T+ G+ F + + + + L GKVVLITGAS +G + R
Sbjct: 14 FFTFFGLCFFLPPFYFFKFLQSIFSTIFSENLYGKVVLITGASSGIGEQLAYEYACRGAC 73
Query: 307 LSLLLGGKENSKELNRI 357
L+L K +E+ I
Sbjct: 74 LALTARRKNRLEEVAEI 90
>At1g24470.1 68414.m03082 short-chain dehydrogenase/reductase (SDR)
family protein similar to b-keto acyl reductase
GI:2586127 from [Hordeum vulgare]
Length = 312
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 258 GIGEALAHVFYGQGCKIILASRRKRELERVKQD 356
GIG A AH G +IL SR +LE V D
Sbjct: 63 GIGRAFAHELAKHGLNLILVSRNLSKLESVSDD 95
>At5g50690.1 68418.m06281 short-chain dehydrogenase/reductase (SDR)
family protein similar to steroleosin [Sesamum indicum]
GI:15824408; contains Pfam profile PF00106:
oxidoreductase, short chain dehydrogenase/reductase
family
Length = 299
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 205 KRRSTLRGKVVLITGASLVLGRHWLMYFMDRAVKLSLL 318
K + GKVV+ITG+S +G H + R L+L+
Sbjct: 40 KESEKVNGKVVIITGSSSGIGEHLAYEYARRGAYLTLV 77
>At5g50590.1 68418.m06267 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 299
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 205 KRRSTLRGKVVLITGASLVLGRHWLMYFMDRAVKLSLL 318
K + GKVV+ITG+S +G H + R L+L+
Sbjct: 40 KESEKVNGKVVIITGSSSGIGEHLAYEYARRGAYLTLV 77
>At5g19200.1 68418.m02286 short-chain dehydrogenase/reductase (SDR)
family protein similar to follicular variant
translocation protein 1 precursor (FVT-1) SP:Q06136 from
[Homo sapiens]
Length = 331
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 255 SGIGEALAHVFYGQGCKIILASRRKRELERVKQDL 359
SGIG ALAH +G K+ + +R +L K+ +
Sbjct: 47 SGIGLALAHRAVSEGAKVSILARSTEKLAEAKRSI 81
>At5g04900.1 68418.m00515 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 348
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 258 GIGEALAHVFYGQGCKIILASRRKRELERVKQDLISRKVCFAESTTGSETRPTE 419
GIG ALA F G +++ S R ERV+ + S K F E G++ TE
Sbjct: 90 GIGYALAREFLKAGDNVVICS---RSAERVETAVQSLKEEFGEHVWGTKCDVTE 140
>At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 326
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 255 SGIGEALAHVFYGQGCKIILASRRKRELERVKQDL 359
SGIG ALAH +G ++ + +R +LE K+ +
Sbjct: 49 SGIGLALAHRAASEGARVSILARSGSKLEEAKKSI 83
>At2g26250.1 68415.m03151 beta-ketoacyl-CoA synthase family
(FIDDLEHEAD) (FDH) identical to GB:AJ010713 (fiddlehead
protein)
Length = 550
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 222 TRKGGLNYWCKSGIGEALAHVFYGQGCKIILASRRKRELERVKQDL 359
T G N++ S + + F+ GC ++ S R+R+ K L
Sbjct: 284 TEMVGYNWYVGSDKSMVIPNCFFRMGCSAVMLSNRRRDFRHAKYRL 329
>At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 738
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 559 CNDVL*ATSTVYQAYRIGYVVSSGHDKRVLMKCRLLKV 672
CN V +TV A + V ++GHDKR+ +K L ++
Sbjct: 72 CNIVARLANTVGAAESVLRVAATGHDKRLFVKATLGRI 109
>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1133
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 285 FYGQGCKIILASRRKRELERVKQDLISRKVCFAESTTGSET 407
F G I L+S+ KRE+E+ ++ + + F+E SE+
Sbjct: 604 FAGDASTIGLSSKFKREIEKPNRENACKNIIFSEEICSSES 644
>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 177
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 651 HENPLVVAAGNYIPDPVGLVNSR 583
HEN L+ NY P PVG N+R
Sbjct: 153 HENELIYIVCNYYPMPVGDENTR 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,535,373
Number of Sequences: 28952
Number of extensions: 367636
Number of successful extensions: 1079
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -