Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0770
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    37   0.003
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    29   0.90 
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    26   4.8  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   6.3  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   6.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   6.3  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   8.4  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 321 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 428
           G++ YNF   +P   P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 321 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKF 440
           G+++YNF   +    P S + + G V Y ++  +DR   F
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTF 230


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 485 FESQSILQEPIHIQLEKTFCCFCCASPPLAVDVQAPVSGYCPGQVIPLKID-IENKSHVQ 661
           F  ++I   P+ +   K+FC FC A+        AP   Y        ++D IEN S +Q
Sbjct: 8   FVEKAISNNPVTV-FSKSFCPFCKAAKNTLTKYSAPYKAY--------ELDKIENGSDIQ 58

Query: 662 LHL 670
            +L
Sbjct: 59  AYL 61


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 715 RCGPIRYHLPQKYFYKMKLDMALIFNVY 632
           +C  ++   P KY +  K  +++IF+VY
Sbjct: 834 KCSNLKVEDPTKYHFNAKTLLSIIFDVY 861


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 121 QKHIRSFHSLFVLHNMYSIDYPNRY 47
           +KH+++ HSL++    Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 447 ETKMAFTVINALDLNLNPSYKNQSTFN*KRRSAVFAAHHHL*QW 578
           E+K++F  +N++  N+ P   ++STF    R A      +  QW
Sbjct: 634 ESKISFEALNSIQPNIRPFLLSRSTFVGSGRYAAHWLGDNKSQW 677


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 382 PSKDEGRTGGNVQVKLYMCFPCGISISFP 296
           P  +E +  G   V+LY C  CG +  FP
Sbjct: 119 PPNEEEKWNGVRNVELYQCNVCGHNQRFP 147


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 589 SCIWVLSRSSNTFENRH*K*EPCPTSSCKNIFEE 690
           S +W +S S+NT EN   +  P    + + IF E
Sbjct: 273 SLLWPMSVSTNTLENYELQVRPSTILASQTIFSE 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,392
Number of Sequences: 5004
Number of extensions: 76371
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)