BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0770 (729 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 29 2.9 05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 29 3.8 12_01_0384 + 3012359-3012404,3012641-3012825,3013014-3013045,301... 29 5.0 07_03_0393 - 17630097-17630367,17630483-17630709 28 8.7 01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 28 8.7 >02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641, 4378738-4378779,4378875-4378956,4379035-4379103, 4379180-4379350,4379430-4379495,4379777-4379845, 4379928-4380056,4380845-4380881,4380906-4380997, 4381541-4381602,4381855-4381918 Length = 496 Score = 29.5 bits (63), Expect = 2.9 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +1 Query: 226 STDTMHTGNENISRFLTIYWEVIQGMKLKYHKGNT-YIILPAHCHLSCLHLLKGN 387 S D ++ +E + TI + + G + +G T +II+P SC HL+K + Sbjct: 71 SEDDVNHASEEVKMMSTIDHDNLLGAYCSFTEGETLWIIMPYMAGGSCFHLMKSS 125 >05_05_0357 + 24377989-24378039,24378601-24378632,24378724-24378818, 24379165-24379237,24379804-24379867,24380465-24380732, 24381132-24381202,24382028-24382084,24382302-24382403, 24382544-24382588,24383616-24383693,24384350-24384400, 24384475-24384556,24384883-24384956,24386093-24386144, 24386230-24386288,24386380-24386456,24386692-24386778, 24387011-24387101 Length = 502 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -2 Query: 410 DSVSDITMFPFKR*RQDRWQCAGKIIYVFPLWYF 309 DSV+ I+ +PF R R +CA +I +F LW++ Sbjct: 149 DSVAQISFYPFIRNDIIRTKCANVLISMF-LWFY 181 >12_01_0384 + 3012359-3012404,3012641-3012825,3013014-3013045, 3013387-3013514,3013695-3013940,3014200-3014284, 3014369-3014387,3014563-3014667 Length = 281 Score = 28.7 bits (61), Expect = 5.0 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 449 NQDGIYSNKCIGFESQSILQEPIHIQLEKTFCCFCCASP 565 NQD Y + +G Q + QL+K C+CC +P Sbjct: 205 NQDLPYDSASMGIILQRSEDNLVQGQLKKCITCYCCWNP 243 >07_03_0393 - 17630097-17630367,17630483-17630709 Length = 165 Score = 27.9 bits (59), Expect = 8.7 Identities = 9/28 (32%), Positives = 18/28 (64%) Frame = +2 Query: 557 ASPPLAVDVQAPVSGYCPGQVIPLKIDI 640 + P L D +P+ C G+V+P+K+++ Sbjct: 105 SDPNLGADNASPLLSDCTGEVVPVKVEL 132 >01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694, 8661781-8661897,8662142-8662210,8663204-8663397, 8663552-8663633 Length = 476 Score = 27.9 bits (59), Expect = 8.7 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +3 Query: 303 EIEIPQGKHIYNFTCT--LPPVLPSSFEGEHGYVRYTVKVTLDRP 431 E+ P+ ++ N C P P ++ ++GY RY V D P Sbjct: 335 ELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,970,762 Number of Sequences: 37544 Number of extensions: 459585 Number of successful extensions: 1031 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1005 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1031 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1909952136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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