Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0770
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    31   1.0  
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    28   5.5  
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    27   9.6  
At3g42410.1 68416.m04385 replication protein-related weak simila...    27   9.6  
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina...    27   9.6  

>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
 Frame = +3

Query: 312 IPQG-KHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRP--------WKFDQETKMAF 464
           + QG +H Y  TCT   +  + F+ E  Y+  TV   +  P        WKF    K   
Sbjct: 153 LKQGMRHSYVKTCTYIAIFDADFQPEPDYLERTVPFLIHNPELALVQARWKFVNAKKCLM 212

Query: 465 TVINALDLNLNPSYKNQS 518
           T +  + LN + + + +S
Sbjct: 213 TRMQEMSLNYHFTAEQES 230


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 421 NVTLTVYLT*PCSPSKDEGRTGGNVQVKLYMC 326
           NVT + Y+  PC+PS +  RT  N+ ++L +C
Sbjct: 88  NVTNSHYIAPPCNPSLNYLRTSNNL-IRLLIC 118


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
            similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 644  NKSHVQLHLVKIFLRKVVTYRATSPSSA 727
            N+SHV LHLVK F  K    + + P  +
Sbjct: 1262 NESHVPLHLVKGFEEKKAVRKTSKPGGS 1289


>At3g42410.1 68416.m04385 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 474

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 67  WNTYYAGQTVNGRIEYVFDS--PKKVR 141
           WN Y   + V+G+I+Y F    P+K R
Sbjct: 251 WNAYGDDEVVDGKIDYTFSDVHPRKTR 277


>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
            family protein contains Pfam domain, PF05193: Peptidase
            M16 inactive domain; similar to insulin-degrading enzyme
            (Insulysin, Insulinase, Insulin protease) [Mouse]
            SWISS-PROT:Q9JHR7
          Length = 970

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +1

Query: 106  IEYVFDSPKKVRGIHVKIKGEA-----HTELYESKQEENAQGKTESTDTMHTGNENISRF 270
            ++++  S  K  G H+  + E+      ++LYE   E+     T   D     ++N+   
Sbjct: 810  VQFIIQSSVKGPG-HIDSRVESLLKNFESKLYEMSNEDFKSNVTALIDMKLEKHKNLKEE 868

Query: 271  LTIYWEVIQGMKLKYHK 321
               YW  IQ   LK+++
Sbjct: 869  SRFYWREIQSGTLKFNR 885


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,259
Number of Sequences: 28952
Number of extensions: 389525
Number of successful extensions: 990
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)