Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0769
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 30 0.22
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 0.90
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.1
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 3.6
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.6
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 3.6
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 26 3.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.6
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.6
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 4.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 4.8
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 4.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 4.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 4.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 4.8
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 4.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 4.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 4.8
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 6.3
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 6.3
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 6.3
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 8.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 8.4
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 25 8.4
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 8.4
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 8.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 8.4
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.22
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 274 TETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKE 447
T +EK P+ D K+H+ VE KH +++P P IE++E ++E
Sbjct: 144 TSEEEKEPIQD-----LRKSHKR--KSVEKSSVPNKKHKAERKRSPSPKIEILEDDEE 194
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 0.90
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 29 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 208
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 209 TEKTQKSLFDGI 244
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 213 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 82
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 370 KTQMKHTTTEEKNPLPPIEVIEAEKEKNKFL 462
K+ K TT+ E+ P PP I KEK+ L
Sbjct: 91 KSLRKDTTSTERTPRPPNAFILYRKEKHATL 121
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 220 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 116
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 370 KTQMKHTTTEEKNPLPPIEVIEAEKEKNKFL 462
K+ K TT+ E+ P PP I KEK+ L
Sbjct: 91 KSLRKDTTSTERTPRPPNAFILYRKEKHATL 121
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 370 KTQMKHTTTEEKNPLPPIEV---IEAEKEKNKFLNGIENF 480
K Q+KH + +KN L PI E +K K + I+ F
Sbjct: 58 KGQLKHGVSRQKNKLQPIHKQINYETDKLKERLGKSIDKF 97
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 3.6
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 126 SSKASTPAVSVTSTPMKRLC-FRLLKTSPLR--RPRSLYST-VSRSLFEPAEAHRDSGEE 293
S++ STP V + + + F L ++P+R R R +S +SRS+ + + +R + EE
Sbjct: 325 STEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPAHSAQISRSISKTSRMYRQTAEE 384
Query: 294 P 296
P
Sbjct: 385 P 385
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 313 VVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKEKNKFLNGIENFDPTK 492
+++AE ++ HF K +++ K PL P E + FLN I F+ K
Sbjct: 459 LISAEVQTSSVTPDYTHF-KEEVRKIIDSSKEPLIPFLKRSTLTENDLFLNAIYTFEYAK 517
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 346 LDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKEKNKFLNGIEN 477
L + FD+ +K EEK L + AE EK++ N +E+
Sbjct: 70 LSAKKSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELED 113
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 381 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 476
++HD G S + DR + K++ +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 408 ILFFRRRVLHLSLVEVFNSVQEVL 337
I++ + + LHL LV +FN E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 222 WVFSVATSSADGSTIFSLVSTSRRQL 145
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 222 WVFSVATSSADGSTIFSLVSTSRRQL 145
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 222 WVFSVATSSADGSTIFSLVSTSRRQL 145
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 298 LPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKEKNKFLNGIEN 477
L DK ++ + + L +F T+ ++ K+PLPP + +A++ L G +N
Sbjct: 1116 LLDKRIITRVNSENSRLQPGRNFQFTEKFASSL--KSPLPPFLLSQAKRFNKFLLEGFQN 1173
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 222 WVFSVATSSADGSTIFSLVSTSRRQL 145
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 225 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 127
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 2 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 181
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 182 VLPSAEDVATEKT 220
+LP+A+DV+++ +
Sbjct: 784 ILPNADDVSSKNS 796
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 420 DRSYRSGEGKEQIPERHRELR 482
D S R G +IP+RHR+ R
Sbjct: 2 DLSSRLSSGSSRIPKRHRDYR 22
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 6.3
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 80 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 250
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +1
Query: 220 PEVFIRRYREVCSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDK 372
PEVF R YR VC +E +P K EK +L E +K
Sbjct: 489 PEVFHRIYRYVCKPDADSSEPASPVLMPTK----PEKKKGRVLSETEQAEK 535
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.6 bits (51), Expect = 8.4
Identities = 20/92 (21%), Positives = 36/92 (39%)
Frame = +1
Query: 223 EVFIRRYREVCSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEE 402
E F + R++ + +EK D + +K Q+ ++ Q+K +E
Sbjct: 391 EKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEE-QLKFLLNKE 449
Query: 403 KNPLPPIEVIEAEKEKNKFLNGIENFDPTKLN 498
K IE + EK + + + D KLN
Sbjct: 450 KKLKKSIEALSFEKSEAENSLSSHDIDSQKLN 481
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 403 KNPLPPIEVIEAEKEKNKFLNGIE--NFDPTKLN 498
K+P P IE E EK K L GIE + D K+N
Sbjct: 8 KSPNPTIEEQRNEIEKLKNLTGIEEVHVDGAKVN 41
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 397 EEKNPLPPIEVIEAEKEKNKFLNGIENFDP 486
EE+ P+ PI++ + ++ L E FDP
Sbjct: 728 EEQKPIVPIDLSSMQDDQVSSLTTNEEFDP 757
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 8.4
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 244 REVCSSQLKHTETQEKNPLPDKDV-VAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPP 420
R++C SQL+ QE P DK V EK++ L+G + T M TEE + P
Sbjct: 49 RQLCYSQLEDFLRQETIPFVDKIFDVLREKSY---LEGASNMPSTGM---VTEEVSRYSP 102
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 256 SSQLKHTETQEKNPLP---DKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIE 426
+S KH + PLP +K V KA++ + + + HT+ K P P
Sbjct: 78 NSHNKHALQNSQLPLPKTPEKSTVHRPKANKVEVTDLPSSSSVEHLHTSKHLKGPRLPKN 137
Query: 427 VIEAEKE 447
+I++ ++
Sbjct: 138 IIKSSED 144
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 41 IY*FTMACSVSDTPS---LKDLPKVATDLK 121
+Y F+ CS SDT S LK P++ TD++
Sbjct: 75 VYDFSNLCSDSDTFSGSELKKCPQIETDIQ 104
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 150 VSVTSTPMKRLCFRLLKTSPLR 215
V +T +P + CFRL + PLR
Sbjct: 134 VDITLSPGEEKCFRLKRRIPLR 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,564
Number of Sequences: 5004
Number of extensions: 41832
Number of successful extensions: 201
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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