Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0769
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.14
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 32 0.25
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.00
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 1.3
At1g51900.1 68414.m05850 hypothetical protein 29 1.3
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont... 29 2.3
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 3.0
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 28 3.0
At3g14067.1 68416.m01775 subtilase family protein contains simil... 28 3.0
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 4.0
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met... 28 4.0
At4g09950.1 68417.m01628 avirulence-responsive family protein / ... 28 4.0
At5g47580.1 68418.m05873 expressed protein strong similarity to ... 27 5.3
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 27 5.3
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 5.3
At5g20540.1 68418.m02439 expressed protein 27 7.0
At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family prote... 27 7.0
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 7.0
At1g49010.1 68414.m05495 myb family transcription factor contain... 27 7.0
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 27 9.3
At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 27 9.3
At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphat... 27 9.3
At1g34220.2 68414.m04247 expressed protein contains Pfam profil... 27 9.3
At1g34220.1 68414.m04246 expressed protein contains Pfam profil... 27 9.3
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 32.7 bits (71), Expect = 0.14
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 96 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLFEPAE 269
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 270 AHRDSGEEPAS 302
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.9 bits (69), Expect = 0.25
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 262 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFD-KTQMKHTTTEEKNPLPPIEVIEA 438
Q+K + +E+N K+V+ + + L + +E + + ++K T +E+N E IE
Sbjct: 778 QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837
Query: 439 EKEKNKFLNGIE 474
E+++ + + E
Sbjct: 838 EEKEKRLIEAFE 849
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.00
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 53 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 223
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 224 KS 229
S
Sbjct: 134 SS 135
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 268 KHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKE 447
K ET+E+ L K + ++ + +++ K+QM TEEK P P + E
Sbjct: 128 KKIETEEERRLRKKRELEKQRQDEKHRQQMKNSHKSQMPKGHTEEKKPTPLLTTDRVENR 187
Query: 448 KNK 456
K
Sbjct: 188 LKK 190
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 29.5 bits (63), Expect = 1.3
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +1
Query: 217 DPEVFIRRYREVCSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 396
DP+V IR Y E K + T + + + D + A K +LD + K+ + +
Sbjct: 439 DPDVDIRCYEESPHEVSKFSLTDFEEEIMEDDYIEALKC--RMLDDI--LKKSGHRLEIS 494
Query: 397 EEKNPLPPIEVIEAEKEKNKFLN 465
+ P IE+ EKE+ K +N
Sbjct: 495 RRQYNKPEIEIQVNEKEEKKVIN 517
Score = 28.3 bits (60), Expect = 3.0
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 217 DPEVFIRRYREVCSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 396
DP+++IR Y E + K + T + + + D + K +LD + +K +
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVKC--RMLDEIMKKSGHHLKISRP 419
Query: 397 EEKNPLPPIEVIEAEKEKNKFLN 465
E K P IE E+E+ K ++
Sbjct: 420 EYK---PEIEKQVYEEEEKKVMD 439
>At1g80080.1 68414.m09374 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 496
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 210 LRRPRSLYSTVSRSLFEPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAH 389
+RR LY+ + ++ G + S R C + S P P G L ++ D A
Sbjct: 401 MRRKLRLYNNAGLCVNRDSDLDDAFGSKSGSTVRLCDAETSRPAPSGTVQHLSREEDGAL 460
Query: 390 DDGRKESTAPDRS 428
DG + ++ +S
Sbjct: 461 PDGATDVSSTSKS 473
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 217 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 98
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 28.3 bits (60), Expect = 3.0
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 214 EDPEVF--IRRYREVCSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 387
E+ E+F I+R EV ++ + E N LP + E + L++ ++ + K
Sbjct: 410 EESEMFEEIKRLLEVEEIKMTPADVGE-NLLPKSEKEGGETCLKRLIEALKEEKEEAKKK 468
Query: 388 TTTEEKNPL---PPIEVIEAEKEKNK 456
EE+ ++ IEAEKEK K
Sbjct: 469 VEEEEEEKQRKKEKVKEIEAEKEKKK 494
>At3g14067.1 68416.m01775 subtilase family protein contains
similarity to cucumisin-like serine protease GI:3176874
from [Arabidopsis thaliana]
Length = 777
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 370 KTQMKHTTTEEKNPLPPIEVIEAEKEKNKFLNGIENFDPTK 492
K+ + T + +N PIE + K N F++G + DP K
Sbjct: 572 KSALVTTAYDVENSGEPIEDLATGKSSNSFIHGAGHVDPNK 612
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 65 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 217
S SD+PS L+D+ ++ +LK L+G + VDTN AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579
>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative
similar to methionyl-tRNA synthetase [Oryza sativa]
GI:4091008; contains Pfam profiles PF00133: tRNA
synthetases class I (I, L, M and V), PF01588: Putative
tRNA binding domain
Length = 797
Score = 27.9 bits (59), Expect = 4.0
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +2
Query: 38 KIY*FTMACSVSDTP-SLKDLP-KVATDLKSQLEGFNTSCLRDVDTNEKI----VLPSAE 199
+ Y T VSDT S DL K+ +L S L F L + + V+P A
Sbjct: 373 RYYLLTNRPEVSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAKPDNAGYGSVIPDAH 432
Query: 200 DVATEKTQKSLFDGIEKFV 256
D + KSL + +EKFV
Sbjct: 433 DAESHSLTKSLAEKVEKFV 451
>At4g09950.1 68417.m01628 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 336
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 325 EKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKEK 450
EK+H +L+G++ Q+K + + K L + E EK
Sbjct: 254 EKSHNEMLEGIKEKISNQLKESLEDVKEQLAKAQAEREETEK 295
>At5g47580.1 68418.m05873 expressed protein strong similarity to
unknown protein (pir||E71441)
Length = 748
Score = 27.5 bits (58), Expect = 5.3
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +1
Query: 256 SSQLKHTETQ--EKNPLPDKDV---VAAEKAHQNLLDGVEHFDKTQMKHTTTE--EKNPL 414
S+ + H+E++ + NP +D+ V + L+D + ++ H + +K P+
Sbjct: 395 SNTITHSESEKSDSNPSSRQDLASFVLHLEGEDPLVDVMVRSNREATDHWIEKGRKKQPV 454
Query: 415 PPIEVIEAEKEKNKFLNGIENFDPTKL 495
IE++EA +K GI FD K+
Sbjct: 455 NLIELLEATTPISKGFEGIAEFDSNKV 481
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 288 EEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEG 446
E +R +SPP PLG + L ++ DD +E +S G G
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNG 498
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 220 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 95
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
>At5g20540.1 68418.m02439 expressed protein
Length = 384
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 68 VSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 214
++ TP + + T+ S +S RD D +E++ + +A DV E
Sbjct: 282 LNSTPKVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNE 330
>At5g16120.1 68418.m01883 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 351
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 277 ETQEKNPLPDKDVVAAEKAHQNLLDG 354
E EK PDK +V E A+ +LL+G
Sbjct: 294 ELYEKAKSPDKKIVLYENAYHSLLEG 319
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 279 DSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 458
+S ++ R R SP R SDE+ DD +++S++ ++ GK +
Sbjct: 794 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852
Query: 459 PERHRELRS 485
RH RS
Sbjct: 853 -RRHVSSRS 860
>At1g49010.1 68414.m05495 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 314
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 462 QEFVLFLLRFDNFDRGQWILFFRRRVLHLSLVEVFNSVQEVLV 334
+E LFLL D F +G W R V+ + +V + Q+ +
Sbjct: 139 EEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFI 181
>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
Domain of Unknown function
Length = 350
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 385 HTTTEEKNPLPPIEVIEAEKEKNKFL 462
H EEK+ LP +E E KEK K L
Sbjct: 271 HFEEEEKDLLPMVEAAEMGKEKQKKL 296
>At3g10720.2 68416.m01291 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 619
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 27 LPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--- 197
LP + ++S + P + PP P P + S++ +P+++ STP +LC +L
Sbjct: 43 LPFEPPVESPFFPP--SQPPIFVPPSQPPS-LPPSQSQSPSLACKSTPYPKLCRTILNAV 99
Query: 198 KTSP 209
K+SP
Sbjct: 100 KSSP 103
>At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 216
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 297 ASGQRCCRSGESPPEPLGRS 356
+S RCC S ESPPE R+
Sbjct: 47 SSSARCCSSMESPPEGYRRN 66
>At1g34220.2 68414.m04247 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 619
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 328 KAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKEKN 453
K+H++LLDG + F K EE+N + + A KEK+
Sbjct: 194 KSHEDLLDGPKQFGGGS-KLPLPEEQNEKTNLTSLSAAKEKS 234
>At1g34220.1 68414.m04246 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 649
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 328 KAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEVIEAEKEKN 453
K+H++LLDG + F K EE+N + + A KEK+
Sbjct: 224 KSHEDLLDGPKQFGGGS-KLPLPEEQNEKTNLTSLSAAKEKS 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,041,552
Number of Sequences: 28952
Number of extensions: 239041
Number of successful extensions: 955
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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