Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0762
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 46 7e-06
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 32 0.096
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 31 0.17
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.89
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.2
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 28 1.6
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.1
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 2.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 26 4.8
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 26 4.8
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 4.8
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.8
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 26 4.8
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 8.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 8.3
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 8.3
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 45.6 bits (103), Expect = 7e-06
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +3
Query: 147 EKNKLIYR*RDKRNIPKTKRV*ISHTKESQTKRR-LCQYIAYELALLEDITTRRKKIQLT 323
EKN I+ + NI KT+RV Q K YI YE+ L R K++ +T
Sbjct: 21 EKN--IFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQYEINLETLRAKRHKRLNIT 78
Query: 324 EKKKDLEYAIAQRLNQLFKRFIYKFQNEIEIYFEYIKFCKGVGFQQAISGIIGQMLQIHG 503
K +YA +++ LF R KF ++ ++ +YI + + + + I LQ H
Sbjct: 79 GKITISDYAGPRKVLFLFLRATNKFFGDVTLWLDYIHYAQKIKAVNIVGKICVAALQKHP 138
Query: 504 DN 509
+N
Sbjct: 139 NN 140
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 91 MAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVN 258
MAE+V +E + ELE + N++ +EI I + R+ FE + RR + D+++
Sbjct: 1 MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLS 56
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 31.9 bits (69), Expect = 0.096
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +1
Query: 94 AEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKED 249
AEQ+++++E + ELE + T E++++ K + FE +Q ++++D
Sbjct: 81 AEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDD 132
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 136 LEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKED 249
++QM TNL D+E S RK+++ I++R +ED
Sbjct: 1390 IKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLRED 1427
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 0.89
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 88 KMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVN 258
K + N R++ + ELE +R N EI ++ ++ + I K+K+ +N
Sbjct: 492 KALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLIN 548
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 88 KMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVNTSL 267
K E + + N +NE+ +R N +I I++++ +++R+K E VN S
Sbjct: 506 KELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSYE--VNVSE 563
Query: 268 MN 273
+N
Sbjct: 564 LN 565
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 109 QRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQ 240
Q + + +L++M + + DEE K +SQ++ + EY I Q
Sbjct: 629 QTLAQLHLQLDEMTQRLVSLDEESKAVSQRKLDLEYKINNSKTQ 672
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 515 MWLMASKWESLEQNNLENAKAFLLKGIQRNPDAEPLYLELFNIEL 649
+WL+ +K E E+ ++ A+ + +NP E L+LEL +EL
Sbjct: 715 LWLLLAKLE--EKQSVIRARVVFDRAKVKNPKNEFLWLELIKMEL 757
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 515 MWLMASKWESLEQNNLENAKAFLLKGIQRNPDAEPLYLELFNIE 646
+WL A K E N ++ K + K ++ NP + L+ E N+E
Sbjct: 344 LWLEAEKLE----NQAQHKKRIIKKALEFNPTSVSLWKEAVNLE 383
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 109 QRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYVNT 261
Q+I ELE + R +E+ + +KRK+ I + K +E+ +++
Sbjct: 333 QQIRGKAKELETLLRGKRKRLDEVLSVYEKRKDEHQSISKDFKSQEELISS 383
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 165 YR*RDKRNIPKTKRV*ISHTKESQTKRRLCQYIAYELALLEDITTR-RKKIQLTEKKKDL 341
+R R+ R KT+R S + RRL Q + L LLE + R +KK+Q E
Sbjct: 234 FRRREIRQARKTRR---SDAQSYDRLRRLRQSMETSLQLLEQVYKREQKKLQALED---- 286
Query: 342 EYAIAQR 362
+YAI Q+
Sbjct: 287 DYAIFQK 293
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 481 DKCCRYMVITSNVVDGEQMGEFRTEQS 561
D+CCRY+V S ++ ++GE T+++
Sbjct: 1045 DECCRYIVALSCELERRRLGEEDTKRA 1071
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 428 ILKIYFNFILELINKALEKLVQTLSNGILQILF 330
ILK FN + + + +EKL++++S +L++ F
Sbjct: 630 ILKRIFNSLTSINDSNIEKLLESISYSLLKLFF 662
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Frame = -2
Query: 244 LFV*LSFVCDIQTLFVFGIFLLSLHLYISLF------FSFAPTHLSYSQYVDLLVQPFLF 83
LF L FVC ++ +LH ++ LF F L Y + ++ F +
Sbjct: 17 LFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFY 76
Query: 82 ISLYYFYY 59
++F++
Sbjct: 77 WFFFFFFF 84
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = -2
Query: 199 VFGIFLLSLHLYISLFFSFAPTHLSYSQYVDLLVQPF-------LFISLYYFYYTKTLSY 41
+F IF+ S+ + I + F H YS V +++Q F +F+S + YY + +Y
Sbjct: 353 LFSIFMASMSVIIVVSEVFL--HTQYS-LVGIILQKFTNSSATSIFVSFLFVYYMRYCTY 409
Query: 40 KTV 32
K++
Sbjct: 410 KSL 412
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1
Query: 569 HFLDCSVLNSPI 534
HF+DC+VLN P+
Sbjct: 485 HFMDCNVLNRPV 496
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 514 LRLSPCICNICPMIPEIAC*NPTPLQNFIYS 422
L+ + + N+CP+ + C P+Q+FI S
Sbjct: 479 LKFTDDVRNVCPLNLNVCCCIAEPIQSFILS 509
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 190 IFLLSLHLYISLFF-SFAPTHLSYSQYVDLLVQPFLFISLYYFYYTKTLS 44
+FLL Y LFF P+H+ Y+ + +L ++ + +T TLS
Sbjct: 118 VFLLFFKFYSRLFFFRIIPSHILYNSFRIVLFLSHASPAILHTIFTFTLS 167
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 88 KMAEQVNQRIENMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKEDYV--NT 261
K+A Q + +EN +++ TDE + + +K + EY +Q +++ Y NT
Sbjct: 620 KLAAQRDAAVENANYSRSLIQKKT--TDETVGSLIEKVGKLEYEVQGTLEEATSYYQKNT 677
Query: 262 SLMNL 276
L L
Sbjct: 678 ELQQL 682
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 285 EDITTRRKKIQLTEKKK 335
ED+TT R+KI +T K+K
Sbjct: 595 EDLTTSRRKIGITSKRK 611
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 153 SSHLLQLIYHILNTLIYLFSHFYLYL 76
SS L + +HI+ +LIYL H +++
Sbjct: 480 SSQLFPMRFHIIRSLIYLSRHTGVFI 505
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 121 NMINELEQMRRTNLYTDEEIKEISQKRKEFEYHIQRRVKQKE 246
N N + R + DEE K K+ F+ H Q ++ Q++
Sbjct: 815 NAYNRISTFLRMQI--DEECKPCQFKKSNFKEHFQNKIYQEQ 854
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 539 ESLEQNNLENAKAFLLK-GIQRNPDAEPLYLELFNIELIDLCFKAETD----EEKEKLQK 703
ESL +NN + + G+ NPDA +++L + + + K + EEKE++QK
Sbjct: 174 ESLTENNAKVPNVVIADPGMSYNPDAAA-WMKLLDTKGSEELKKEQKRISELEEKERIQK 232
Query: 704 KA 709
KA
Sbjct: 233 KA 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,639
Number of Sequences: 5004
Number of extensions: 63047
Number of successful extensions: 256
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -