Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0761
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    30   0.23 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.23 
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   2.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   3.8  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    26   5.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.6  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   6.6  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   8.8  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = +2

Query: 329  AIRALETLLPGEKLRPLLKEVLHEERAVSLNQAKSVLE 442
            A+R++  LLP E    +L ++LH+ERA+   +A S+++
Sbjct: 1127 ALRSVIHLLPNELFCTVLGKLLHDERALLRRKALSIVQ 1164


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 28/89 (31%), Positives = 42/89 (47%)
 Frame = -3

Query: 501 NSLSSTGTPWTTSNGPHNMNSKTDFA*FNDTARSSCRTSFRSGLSFSPGRSVSSALIAHR 322
           +SLS +GT  +TS  P  + ++T  + F  T+ SS  +S  S  S SP  S S +  + +
Sbjct: 119 SSLSYSGTISSTSIAPSMIGTRTSSSYF-ITSSSSTPSSSSSSSSSSPSSSSSKSSSSSK 177

Query: 321 QREFRGSSVLQFASLLSPCKIHISRNSWS 235
                 SS    +S  S  K   S +S S
Sbjct: 178 SSSSSSSSSKSSSSSSSSSKSSSSSSSSS 206


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 611 RTRNIRCSCSKTFSCTLVLTKPCKTVARSKSSQ 513
           RTR +    + TFSC +VLT   K+  + KS +
Sbjct: 87  RTRGLLILHTFTFSCLIVLTNKDKSSIKDKSDR 119


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 224 E*RQSIVRNVVISLGFPQRHERGQSLRDFLDPSRLKALEAVDQLQHHE 81
           E R S++      LGFP++ E   ++  ++  + L AL     L  HE
Sbjct: 678 EVRASVLTAFTTFLGFPEKTEEVVAVETYIAIAALAALSDASPLVRHE 725


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 276 LSPCKIHISRNSWSSEPRVTSIYRPERCY*PGLPSAPRTRTKSP 145
           L P  +  +RN + +    +++Y P+      LP+A R R K P
Sbjct: 227 LPPPGMPYNRNQYVAWHGASAVYHPQPSLEAQLPAAARKRKKEP 270


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 333  IAHRQREF-RGSSVLQFASLLSPCKIHISRNSWSSEPRVTSI--YRPERCY*PGLPSAPR 163
            I++ ++ F + SS++     LSP    ++R+S SS+   TSI   +P +   P    APR
Sbjct: 957  ISNTKQSFDKKSSLIDSIPALSPAPSSLARSSVSSQRSSTSIIPIKPNKPTKPDHLVAPR 1016

Query: 162  TRTKSP 145
             +   P
Sbjct: 1017 VKPLLP 1022


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 568 VPSF*PNRVRPWLAXSP-ASA*GQLPL-VHRHTLDH 467
           VPS  P+   PWL  +P A+    LPL  H H L H
Sbjct: 31  VPSANPSLTTPWLQTTPSANRPTWLPLQQHMHQLRH 66


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 176 PQRHERGQSLRDFLDPSRLKALEAVDQLQH 87
           P   E  Q +RD L PSRL  L  + ++QH
Sbjct: 214 PSIMESRQWIRDLLLPSRLGLLLDIGRIQH 243


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 494  RELSLSAG-WTXSEPRSYTVWSERG 565
            +E  L+AG WT  EPR YT+    G
Sbjct: 948  QEEPLNAGAWTYMEPRIYTILKHLG 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,176
Number of Sequences: 5004
Number of extensions: 51067
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)