BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0761 (617 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57 SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 30 1.7 SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.0 SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9) 29 3.0 SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2) 29 4.0 SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 5.3 SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3 SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017) 28 5.3 SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_22012| Best HMM Match : ERO1 (HMM E-Value=0) 28 7.0 SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 >SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1569 Score = 31.5 bits (68), Expect = 0.57 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +1 Query: 217 RHSRLRRPTVTGDVYFARTEQRGELQN*--RTSKLPLPMRNKSTRNAPAGGEAQATPKRG 390 R++RLR+ +V A EQ ++N KLP + R APA G A+ K Sbjct: 1124 RNTRLRKDSVMSPTLEAIQEQAPAMENVVEEVEKLPAKKTRGAKRKAPASGNAEKKAKAE 1183 Query: 391 P 393 P Sbjct: 1184 P 1184 >SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2124 Score = 30.3 bits (65), Expect = 1.3 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 163 NEDKVSEISSTPRA*RHLRPLISCSIMKIASCTC 62 N+ KV + TP + R L P+ S I+K+A TC Sbjct: 777 NKKKVFRYTGTPNSYRLLTPIHSARIIKVAPLTC 810 >SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) Length = 1590 Score = 29.9 bits (64), Expect = 1.7 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -1 Query: 566 TLVLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDST 414 +L+ PC+TV+ + + + T PP + P PT P P + L ST Sbjct: 488 SLLNLDPCRTVSHALMTSQRPLTSDDPPHKIKPAPTTPRQ--PPMPLASST 536 >SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) Length = 1467 Score = 29.1 bits (62), Expect = 3.0 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -1 Query: 497 PSRPPAHLGPRPTAPIT*IPKLT--LPDSTIQHAPHVGPLLGVA*ASPP 357 P+ PP P P I +P LT LP T++H P PL +A PP Sbjct: 638 PTPPPRQSTPPPLLLIPLLPLLTLPLPPPTVRH-PQATPLPRLATHPPP 685 >SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9) Length = 168 Score = 29.1 bits (62), Expect = 3.0 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = +3 Query: 78 IFMMLQLINGLKCLQARGVEEISETLSSFVALREAQANNNVPDDRLTSLSAPKTNCYGRC 257 IF+ LQ + C+ + G + ++E + A RE + P+D S+P +G C Sbjct: 65 IFIGLQQCHDTGCMPSSGTQGVAEIGHTASAARERNTFSATPEDGCMPGSSP-VRVFGNC 123 Query: 258 V 260 + Sbjct: 124 I 124 >SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2) Length = 759 Score = 28.7 bits (61), Expect = 4.0 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = +2 Query: 239 QLLREMCILQGLSNEANCKTDEPLNSL--CRCAIRALETLLPGEKLRP 376 +L R++ +LQ + +N + + L RC I L +LLP E +RP Sbjct: 699 ELERQIVLLQRENKASNDRNHQYTADLYEARCEIARLRSLLPSENVRP 746 >SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) Length = 2123 Score = 28.3 bits (60), Expect = 5.3 Identities = 17/55 (30%), Positives = 21/55 (38%) Frame = -1 Query: 578 TFSCTLVLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDST 414 T T T K + S TT + P PR T P T P+ T P +T Sbjct: 1751 TLKTTSTSTSTTKYIPPPHSPPTTTTTTTTTPETTAPRTTTPETTTPETTTPRTT 1805 >SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 313 Score = 28.3 bits (60), Expect = 5.3 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 360 PGRSVSSALIAHRQREFRGSSVLQFASLLSPC 265 PG SVS++L++HR + G+ SLLS C Sbjct: 224 PGGSVSTSLLSHRSADIYGNG-FDNVSLLSVC 254 >SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017) Length = 436 Score = 28.3 bits (60), Expect = 5.3 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 561 RSDQTV*DRGSLXVQP--ALRDNSLSSTGTPWTTSNGPHNMNSKT 433 ++D+ + S+ QP AL + +SST TP +N N+KT Sbjct: 93 QNDEPIRRNDSVATQPTLALNTSKVSSTSTPAAKETASNNSNNKT 137 >SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 849 Score = 27.9 bits (59), Expect = 7.0 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 590 SCSKTFSCTLVLTKPCKTVARSKSS 516 SCSK +CT +PC A++K S Sbjct: 618 SCSKLINCTATPMQPCVVPAQTKES 642 >SB_22012| Best HMM Match : ERO1 (HMM E-Value=0) Length = 400 Score = 27.9 bits (59), Expect = 7.0 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = +2 Query: 242 LLREMCILQGLSNEANCKTDEPLNSLCRCAIRALETLLPGEKLRPLLKEVL 394 LLRE+ GLS++ CK + C C + ++ + K+ P+L E++ Sbjct: 15 LLREIVEPAGLSDQCFCKLKGKVEQCC-CDVETVDKI--NNKIHPILDELV 62 >SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 310 Score = 27.9 bits (59), Expect = 7.0 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -1 Query: 533 ARSKSSQRLGTTPSRPPAHLGPRPTA-PIT*IPKLTLPDSTI 411 A ++ SQR G +P PP + P PT+ P T + P TI Sbjct: 48 AEAQLSQRHGLSPPTPPEGISPLPTSTPSTSSSPVASPLDTI 89 >SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 188 Score = 27.5 bits (58), Expect = 9.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 154 KVSEISSTPRA*RHLRPLISCSIMKIASCTCSVGT 50 K+ +S PR + L SCS+++ +C C V T Sbjct: 134 KIKLVSGDPRDIQSLIEQCSCSVLRSVTCRCLVVT 168 >SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 837 Score = 27.5 bits (58), Expect = 9.2 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -2 Query: 118 RHLRPLISCSI-MKIASCTCSVGTSWELVERASTERR 11 R R I CS+ I + TC V + W L+ER + E R Sbjct: 739 RSERRKIMCSVSFHIIAITCVVWSLWVLIERTAQEIR 775 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,976,066 Number of Sequences: 59808 Number of extensions: 437275 Number of successful extensions: 1570 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1569 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1524174750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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