Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0761
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)                   30   1.7  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   3.0  
SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9)                  29   3.0  
SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)                     29   4.0  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   5.3  
SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017)                28   5.3  
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)                        28   7.0  
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 217  RHSRLRRPTVTGDVYFARTEQRGELQN*--RTSKLPLPMRNKSTRNAPAGGEAQATPKRG 390
            R++RLR+ +V      A  EQ   ++N      KLP      + R APA G A+   K  
Sbjct: 1124 RNTRLRKDSVMSPTLEAIQEQAPAMENVVEEVEKLPAKKTRGAKRKAPASGNAEKKAKAE 1183

Query: 391  P 393
            P
Sbjct: 1184 P 1184


>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 163 NEDKVSEISSTPRA*RHLRPLISCSIMKIASCTC 62
           N+ KV   + TP + R L P+ S  I+K+A  TC
Sbjct: 777 NKKKVFRYTGTPNSYRLLTPIHSARIIKVAPLTC 810


>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
          Length = 1590

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 566 TLVLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDST 414
           +L+   PC+TV+ +  + +   T   PP  + P PT P    P + L  ST
Sbjct: 488 SLLNLDPCRTVSHALMTSQRPLTSDDPPHKIKPAPTTPRQ--PPMPLASST 536


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 497 PSRPPAHLGPRPTAPIT*IPKLT--LPDSTIQHAPHVGPLLGVA*ASPP 357
           P+ PP    P P   I  +P LT  LP  T++H P   PL  +A   PP
Sbjct: 638 PTPPPRQSTPPPLLLIPLLPLLTLPLPPPTVRH-PQATPLPRLATHPPP 685


>SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9)
          Length = 168

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 78  IFMMLQLINGLKCLQARGVEEISETLSSFVALREAQANNNVPDDRLTSLSAPKTNCYGRC 257
           IF+ LQ  +   C+ + G + ++E   +  A RE    +  P+D     S+P    +G C
Sbjct: 65  IFIGLQQCHDTGCMPSSGTQGVAEIGHTASAARERNTFSATPEDGCMPGSSP-VRVFGNC 123

Query: 258 V 260
           +
Sbjct: 124 I 124


>SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)
          Length = 759

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 239 QLLREMCILQGLSNEANCKTDEPLNSL--CRCAIRALETLLPGEKLRP 376
           +L R++ +LQ  +  +N +  +    L   RC I  L +LLP E +RP
Sbjct: 699 ELERQIVLLQRENKASNDRNHQYTADLYEARCEIARLRSLLPSENVRP 746


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -1

Query: 578  TFSCTLVLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDST 414
            T   T   T   K +    S     TT +  P    PR T P T  P+ T P +T
Sbjct: 1751 TLKTTSTSTSTTKYIPPPHSPPTTTTTTTTTPETTAPRTTTPETTTPETTTPRTT 1805


>SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 360 PGRSVSSALIAHRQREFRGSSVLQFASLLSPC 265
           PG SVS++L++HR  +  G+      SLLS C
Sbjct: 224 PGGSVSTSLLSHRSADIYGNG-FDNVSLLSVC 254


>SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017)
          Length = 436

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 561 RSDQTV*DRGSLXVQP--ALRDNSLSSTGTPWTTSNGPHNMNSKT 433
           ++D+ +    S+  QP  AL  + +SST TP       +N N+KT
Sbjct: 93  QNDEPIRRNDSVATQPTLALNTSKVSSTSTPAAKETASNNSNNKT 137


>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 590 SCSKTFSCTLVLTKPCKTVARSKSS 516
           SCSK  +CT    +PC   A++K S
Sbjct: 618 SCSKLINCTATPMQPCVVPAQTKES 642


>SB_22012| Best HMM Match : ERO1 (HMM E-Value=0)
          Length = 400

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 242 LLREMCILQGLSNEANCKTDEPLNSLCRCAIRALETLLPGEKLRPLLKEVL 394
           LLRE+    GLS++  CK    +   C C +  ++ +    K+ P+L E++
Sbjct: 15  LLREIVEPAGLSDQCFCKLKGKVEQCC-CDVETVDKI--NNKIHPILDELV 62


>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 533 ARSKSSQRLGTTPSRPPAHLGPRPTA-PIT*IPKLTLPDSTI 411
           A ++ SQR G +P  PP  + P PT+ P T    +  P  TI
Sbjct: 48  AEAQLSQRHGLSPPTPPEGISPLPTSTPSTSSSPVASPLDTI 89


>SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 154 KVSEISSTPRA*RHLRPLISCSIMKIASCTCSVGT 50
           K+  +S  PR  + L    SCS+++  +C C V T
Sbjct: 134 KIKLVSGDPRDIQSLIEQCSCSVLRSVTCRCLVVT 168


>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 118 RHLRPLISCSI-MKIASCTCSVGTSWELVERASTERR 11
           R  R  I CS+   I + TC V + W L+ER + E R
Sbjct: 739 RSERRKIMCSVSFHIIAITCVVWSLWVLIERTAQEIR 775


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,976,066
Number of Sequences: 59808
Number of extensions: 437275
Number of successful extensions: 1570
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)