Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0761
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical p...    35   0.054
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    31   0.66 
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    31   0.87 
U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific ...    31   0.87 
U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect...    29   2.0  
U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect...    29   2.0  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.        29   2.0  
U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific...    29   2.7  
Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    28   6.1  
L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical pr...    28   6.1  
L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical
           protein Y57G11C.38 protein.
          Length = 317

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -1

Query: 602 NIRCSCSKTFSC---TLVLTKP-CKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPK 435
           NI CS + T S    T       C ++A+SKS+  +GT   R     GPRP         
Sbjct: 68  NISCSAASTSSSIKSTCSCNSDFCNSLAKSKSALSVGT---RGNGWWGPRPNTQQNITVN 124

Query: 434 LTLPDSTIQHAPHVG 390
           LTLPD  + H    G
Sbjct: 125 LTLPDRNLVHCEECG 139


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 527 SKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPHVGP 387
           + +SQ L T P  PP +  P P  P +    LT   S  Q+AP + P
Sbjct: 816 ASNSQPLSTLPPPPPPNPPPAPQPPSS-AASLTPAPSAAQNAPSIAP 861


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = -1

Query: 590 SCSK----TFSCTLVLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLP 423
           SCSK    TF+C+      C     S + Q +      PP    P+P  PI   P  T+ 
Sbjct: 86  SCSKSTGNTFACSTTCESTCDKTCASAAQQAMSHIQVSPP---NPQPLVPIAAAP--TVD 140

Query: 422 DSTIQHAPHVGPLLGVA*ASPPA 354
           DS      +V     V+  SPPA
Sbjct: 141 DSCQNVCQNVCQGACVSQNSPPA 163


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
 Frame = +2

Query: 230 SEDQLLREMCILQGLSNEANCKTDEPLNSLCRCAIRALETLL--------PGEKLRPLLK 385
           S ++  R + + + L  E     DE L  LCR A+RAL TLL        P  +LR    
Sbjct: 522 SYNEFPRLLFLPETLGAEIESGGDE-LVGLCRYALRALCTLLHHKMDGKAPPIQLRSRFS 580

Query: 386 E-------VLHEERAVSLNQAKSVLEFMLW 454
                   +L E+++ SL +AK+V+E  LW
Sbjct: 581 RALSACAVLLQEDKSNSLTKAKNVMELALW 610


>U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific
           family, class qprotein 4 protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
 Frame = +1

Query: 322 PMRNKSTRNA----PAGGEAQATPKRGPT*GACCIVESGKVSFGIHVMGAVGRGPRCAGG 489
           PM   ST  A    P GG +  T   G   GA  +   G    G   M A+G GP   GG
Sbjct: 220 PMGGSSTMTAVGGAPIGGSSTMTAVGGAPRGASTMTAVGGAPGGASTMTAMGGGPSAFGG 279


>U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform b protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 465 SNGPHNMNSKTDFA*FNDTARSSCRTSFRSGLSFSPGRS 349
           S+  HN   + D + F+     S RT+ +SG+S  PG S
Sbjct: 358 SSNTHNYFDRPDISKFSPWQPRSRRTTLKSGISVEPGTS 396


>U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform a protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 465 SNGPHNMNSKTDFA*FNDTARSSCRTSFRSGLSFSPGRS 349
           S+  HN   + D + F+     S RT+ +SG+S  PG S
Sbjct: 358 SSNTHNYFDRPDISKFSPWQPRSRRTTLKSGISVEPGTS 396


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -1

Query: 470  PRPT--APIT*IPKLTLPDSTIQHAPHVGPLLGVA*AS--PPAGA 348
            P PT  +P+T  P +TLP  ++  A   GP+L V   S  P +GA
Sbjct: 2188 PSPTNQSPVTQAPPVTLPPPSVATAGPTGPILTVVPVSSAPTSGA 2232


>U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 465 SNGPHNMNSKTDFA*FNDTARSSCRTSFRSGLSFSPGRS 349
           S+  HN   + D + F+     S RT+ +SG+S  PG S
Sbjct: 358 SSNTHNYFDRPDISKFSPWQPRSRRTTLKSGISVEPGTS 396


>U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific
           family, class qprotein 3 protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
 Frame = +1

Query: 322 PMRNKSTRNA----PAGGEAQATPKRGPT*GACCIVESGKVSFGIHVMGAVGRGPRCAGG 489
           PM   ST  A    P GG +  T   G   G   +   G    G   M A+G GP   GG
Sbjct: 114 PMGGSSTMTAVGGAPIGGSSTMTAVGGAPRGVSTMTAVGGAPGGASTMTAMGGGPSAFGG 173


>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -3

Query: 312 FRGSSVLQFASLLSPCKIHISRNSWSSEPRVTSIYRPERCY*PGLPSAPRTRTKSPRFPR 133
           FR  +   +  +L   ++ +S  S   E    S++R +R    GLPS  +     PR PR
Sbjct: 47  FRAETDAAWVEMLD-VQVMVSPPSKPKENPFNSVFRQKRQTFSGLPSWCQCEPAKPRCPR 105

Query: 132 -PLAPEGT*GR*SVAAS 85
            P  P G  G+   + S
Sbjct: 106 GPPGPPGRPGQRGTSGS 122


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 617 VDRTRNIRCSCSKTFSCTLVLTKPCKTVARSKSSQRLGTTPSR 489
           +D+   +       F CT    K CK + R + S+R+ T  SR
Sbjct: 829 IDKFEKMNDLAVNIFECTEKFNKNCKKINRLRPSRRMTTDNSR 871


>L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical
           protein C30A5.10b protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 489 STGTPWTTSNGPHNMNSKTDFA*FNDTARSSCRTSFRSG-LSFSPGRSVSSALIAHRQR 316
           +T T WTTS  P  ++     +  N  +  S  TSF S  LS    R ++  LI    R
Sbjct: 118 NTETLWTTSKSPMKLSKNPKPSKLNQKSSKSSATSFDSAQLSVLSHRLLNDVLIIPSSR 176


>L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical
           protein C30A5.10a protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 489 STGTPWTTSNGPHNMNSKTDFA*FNDTARSSCRTSFRSG-LSFSPGRSVSSALIAHRQR 316
           +T T WTTS  P  ++     +  N  +  S  TSF S  LS    R ++  LI    R
Sbjct: 118 NTETLWTTSKSPMKLSKNPKPSKLNQKSSKSSATSFDSAQLSVLSHRLLNDVLIIPSSR 176


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -1

Query: 554 TKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPHV 393
           TKP   V  +  +   GTT    P   G   T     + K T+P ST Q AP V
Sbjct: 562 TKP--VVTTNSVTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPV 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,323,547
Number of Sequences: 27780
Number of extensions: 307038
Number of successful extensions: 1126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)