Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0761
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /... 31 0.46
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 1.9
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 2.5
At4g25360.1 68417.m03649 expressed protein 29 3.3
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 29 3.3
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr... 29 3.3
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 4.3
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 4.3
At2g25740.1 68415.m03089 ATP-dependent protease La (LON) domain-... 28 5.7
At1g70380.1 68414.m08096 F-box family protein contains Pfam PF00... 28 5.7
At1g07140.1 68414.m00760 Ran-binding protein 1a (RanBP1a) identi... 28 5.7
At5g59670.1 68418.m07481 leucine-rich repeat protein kinase, put... 27 7.5
At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00... 27 7.5
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 27 7.5
At4g28350.1 68417.m04058 lectin protein kinase family protein co... 27 7.5
At2g18450.1 68415.m02147 succinate dehydrogenase [ubiquinone] fl... 27 7.5
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 27 7.5
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 27 10.0
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r... 27 10.0
At2g18470.1 68415.m02151 protein kinase family protein contains ... 27 10.0
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 486
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 497 PSRPPAHLGP-RPTAPIT*IPKLTLPDSTIQH 405
P++PP H+GP PT P T PK P + +H
Sbjct: 384 PAKPPRHVGPLMPTKPPTMFPKPLAPAKSPRH 415
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 503 TTPSRPPAHLGPRPTAPIT*IPKLTLPDSTI---QHAPHVGPLLGVA*ASPPA 354
T+P PP+ P P++PI P + P + I Q++P + P SPP+
Sbjct: 541 TSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSPPFTGPSPPS 593
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 560 VLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTI 411
V++ C+ S+RLG T S + P PT P P L+ S I
Sbjct: 286 VVSNGCRRAGYFGRSERLGATASSATSRQMPHPTTPTDPNPSLSFCPSNI 335
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = -1
Query: 566 TLVLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPHVGP 387
T T P T A ++ T + PP P +P+T P +T T AP V P
Sbjct: 33 TSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVT---PTSPPAPKVAP 89
Query: 386 LLGVA*ASPP 357
+ ++ A+PP
Sbjct: 90 V--ISPATPP 97
>At4g25360.1 68417.m03649 expressed protein
Length = 533
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 344 ETLLPGEKLRPLLKEVLHEERAVSLNQA 427
E +LPG+ ++ E++HE++A NQA
Sbjct: 423 EPILPGKLVKNGFTEIMHEKQATGYNQA 450
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = -1
Query: 497 PSRPPAHLGPRPTAPIT*IPKLTLPD-------STIQHAPHVGPLLGVA*ASPPAGAFRV 339
P P A P P T LT+PD S ++ +P GP+ ASP +GAF V
Sbjct: 84 PPMPMASPPMMPMTPSTSPSPLTVPDMPSPPMPSGMESSPSPGPMPPAMAASPDSGAFNV 143
>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 811
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 326 CAIRALETLLPGEKLRPLLKEVLHEERAVSLNQAKSVLEFMLWGPLDVVQGVP-VDERE 499
C++R L+ G+ + L+ + HE V + A + L +L LDVVQGV +DE +
Sbjct: 670 CSVRESFCLVEGQAVDKLVDLLDHENDKV-VGPALAALSTLLEDGLDVVQGVRLIDEAD 727
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 506 GTTPSRPPAHLGPRPTAPIT*IPKLTLPDS 417
G P PP GPRP P++ PK P S
Sbjct: 399 GPKPPPPPGPKGPRPPPPMSLGPKAPRPPS 428
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 506 GTTPSRPPAHLGPRPTAPIT*IPKLTLPDS 417
G P PP GPRP P++ PK P S
Sbjct: 399 GPKPPPPPGPKGPRPPPPMSLGPKAPRPPS 428
>At2g25740.1 68415.m03089 ATP-dependent protease La (LON)
domain-containing protein low similarity to protease Lon
[Pseudomonas fluorescens] GI:7644385; contains Pfam
profile PF02190: ATP-dependent protease La (LON) domain
Length = 547
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 60 EQVHEAIFMMLQLINGLKCLQARGVEEISETLSSFVALREAQANNNVPDDRL 215
EQ+ E F LQ + + L ++ ++ LSSF AQA+ N+ DD L
Sbjct: 15 EQIRELDFEELQ-VEEVDDLHDSDSDDNNDDLSSFPFSSHAQASGNLGDDEL 65
>At1g70380.1 68414.m08096 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 377
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 410 VSLNQAKSVLEFMLWGPLD-VVQGVPVDERELSLSAGWTXSEPRSYTVWSER 562
+ + + SV F + +D V + + V + AGWT EP+ Y V++ R
Sbjct: 137 IQVPEGASVRSFFGYDKVDKVFKVLCVCVPQTQFGAGWTSKEPKKYQVYTVR 188
>At1g07140.1 68414.m00760 Ran-binding protein 1a (RanBP1a) identical
to Ran-binding protein (atranbp1a) GI:2058282 from
[Arabidopsis thaliana]
Length = 228
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 268 RTEQRGELQN*RTSKLPLPMRNKSTRNAPAGGEAQATPKRGPT 396
+TE++ E + T+K + K A GEA+ T + GP+
Sbjct: 185 KTEEKTEAKAVETAKTEVKAEEKKESEAEKSGEAKKTEESGPS 227
>At5g59670.1 68418.m07481 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 868
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 281 EANCKTDEPLNSLCRCAIRALETLLPGEKLRPLLKEVLHE 400
+ N + D +NS R A+ P RP + +V+HE
Sbjct: 793 DPNLRKDYNINSAWRALELAMSCAYPSSSKRPSMSQVIHE 832
>At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 579
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 417 NDTARSSCRTSFRSGLSFSPGRSVSSALIAHRQREFRGSSVLQF 286
N T R S FRSG+ GRS SS ++ + E R ++ +F
Sbjct: 316 NQTQRKSFSRYFRSGIKHILGRSSSSKNMSSSRSETRPLNLQKF 359
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 497 PSRPPA-HLGPRPTAPIT*IPKLTLPDSTI 411
P+ PP+ H P PTAP+ + LP S+I
Sbjct: 1155 PAPPPSDHCLPPPTAPLAPAQSIALPPSSI 1184
>At4g28350.1 68417.m04058 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 649
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 433 SFGIHVMGAV-GRGPRCAGGREGVVPKRWLDXERATVLHGL 552
SFG+ V+ V GR P GREG+V W E+ V+ GL
Sbjct: 505 SFGVFVLEVVCGRRP-IEEGREGIVEWIWGLMEKDKVVDGL 544
>At2g18450.1 68415.m02147 succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial, putative /
flavoprotein subunit of complex II, putative strong
similarity to SP|O82663 Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (EC
1.3.5.1) (FP) (Flavoprotein subunit of complex II)
{Arabidopsis thaliana}
Length = 632
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 326 CAIRALETLLPGEKLRPLLKE 388
CA R E PGEKL+PL K+
Sbjct: 455 CANRVAEIQKPGEKLKPLEKD 475
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/58 (34%), Positives = 23/58 (39%)
Frame = -1
Query: 521 SSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPHVGPLLGVA*ASPPAGA 348
SS RLG P PP L P P + K +P P G G + PP GA
Sbjct: 707 SSTRLGAPPPPPPPPLSKTPAPPPPPLSKTPVP------PPPPGLGRGTSSGPPPLGA 758
>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
identical to cohesion family protein SYN3 [Arabidopsis
thaliana] GI:12006362; supporting cDNA
gi|12006361|gb|AF281155.1|AF281155
Length = 693
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -1
Query: 575 FSCTLVLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP 399
F V +KP V+ + +P+R A + P +PI P T PDST+Q +P
Sbjct: 424 FEKDYVASKPHLAVSDETLPEPASVSPTRE-AEVEINPVSPI---PDSTNPDSTVQLSP 478
>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1106
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 560 VLTKPCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQ 408
+ +K K ++ ++S + + S+P HL P T+P + L D+ Q
Sbjct: 730 IQSKKKKNTSKKRNSTSMSSPLSKPGEHLEPETTSPTVEEDSMELGDTVNQ 780
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -1
Query: 548 PCKTVARSKSSQRLGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP 399
P + + +T S PPA P PT P PDST AP
Sbjct: 10 PTNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSSSPPPDSTSPPAP 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,101
Number of Sequences: 28952
Number of extensions: 289633
Number of successful extensions: 991
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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