Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0756
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    25   5.0  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   6.7  

>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 174 VSRLVPDFTTNKNKNHSINVVETING*YIVKFPVAIQLAKHQTNKTAELV 25
           V RLV DF   +  N SIN  E +   Y      A+   K  ++KT +L+
Sbjct: 348 VQRLVSDFFDGRALNKSINPDEAVA--YGAAVQAAVLTNKADSDKTQDLL 395


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 22  RYQLGGFIRLMFRKLNGHWKFDDVLTIDGFNY 117
           +Y   G +R +  K    W F  VL +DG+ Y
Sbjct: 268 KYDSDGHVRKLLDKFE--WIFIPVLNVDGYEY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,517
Number of Sequences: 5004
Number of extensions: 45763
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)