Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0756
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)                29   2.2  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_55813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_55369| Best HMM Match : EMP70 (HMM E-Value=0.026)                   27   9.1  
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 463 SVGYTRSRRGLKDKTSGAFVCSDAPVFKSRRWVPIFLMKYVLNRCS 326
           S GY  +R+ LK+K    +V S+A + K+  W  +      LN+ S
Sbjct: 213 SQGYEEARKILKEKYGDPYVISNAYILKATEWPSVSYDPKSLNKFS 258


>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
          Length = 772

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 486 KVSNAQSTRSGIHEVVVA*RIRRPVHSYVVMHRFLNPADG 367
           KV+  Q+ R   HEVV A   R+ V   + +H+F + ++G
Sbjct: 687 KVATEQAIRDLQHEVVKAASKRKGVRKLIFVHKFTDSSEG 726


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 394 HHYIRMHRTSYPLGHDDFVYTRP--STLRVRHFLAG 495
           HH ++MH   +  G  + VY +P   TL+ + +++G
Sbjct: 64  HHRLKMHYRDFKFGVKNIVYDKPVIQTLKPQSYISG 99


>SB_55813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 394 HHYIRMHRTSYPLGHDDFVYTRP--STLRVRHFLAG 495
           HH ++MH   +  G  + VY +P   TL+ + +++G
Sbjct: 64  HHRLKMHYRDFKFGVKNIVYGKPVIQTLKPQSYISG 99


>SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 229 SRGIYPPVWAHKKLTTRFFLLHDVIPSPWKS 321
           S+ + P +W  KK+    ++  +VIP  W S
Sbjct: 53  SKKVIPELWISKKVIPELWISREVIPGLWIS 83


>SB_55369| Best HMM Match : EMP70 (HMM E-Value=0.026)
          Length = 370

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 95  NTSSNFQWPFNLRNIKR-IKPPSWYRTAS 12
           N++++F  P   +NI R I P  WYR+ S
Sbjct: 117 NSATSFDAPCRTKNIPREIPPVPWYRSVS 145


>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 159 ALILKHIAS-IXTVDYPLLRGRIRQ*GYLSTRVGSQEAYHQIFFVTRCYSFTVEVNREHL 335
           AL+L  +A+   T  +P +R        + +     E YH I   TRCY+F    ++E +
Sbjct: 25  ALVLSSVATHFCTRSHPNVRS-------IDSHFDKAELYHTI---TRCYAFIFIFSKETI 74

Query: 336 LSTYFIRNIG 365
             T+++   G
Sbjct: 75  DDTFYLNQYG 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,064
Number of Sequences: 59808
Number of extensions: 346099
Number of successful extensions: 672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)