Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0756
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 91  VLTIDGFNYIDAMVFIFI 144
           V  ++GFNY+ AM+FI I
Sbjct: 126 VWKVNGFNYVSAMIFIII 143


>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 328 NIC*VRISLEILVPICGI*KPVHHYIRMHRTSYPLGHDDFVYTRPST 468
           N+C  R  LE  V  CG  KP++ YI  +   Y +G   F     ST
Sbjct: 521 NVCVFREDLET-VEKCGATKPLYLYINKNNGGYFMGIQSFGRNLTST 566


>AF003151-9|AAK18911.1|  168|Caenorhabditis elegans Hypothetical
           protein D1007.4 protein.
          Length = 168

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 144 NKNKNHSINVVETING*YIVKFPVAIQLAKHQTN 43
           N  K+H ++VVE  NG YI+   V  +   H  N
Sbjct: 116 NYLKSHHLDVVEKPNGTYIIAGTVRFERPYHNAN 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,412,576
Number of Sequences: 27780
Number of extensions: 258962
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)