Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0756
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50250.1 68416.m05495 hypothetical protein predicted protein,...    28   3.2  
At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catal...    28   4.2  
At2g05970.1 68415.m00648 F-box family protein contains F-box dom...    28   4.2  
At4g33400.1 68417.m04747 dem protein-related / defective embryo ...    27   9.8  

>At3g50250.1 68416.m05495 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 148

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 448 RSRRGLKDKTSGAFVCSDAPVFKSRRWVPIFLMKYVLNRCS 326
           R RR L     G      A VF+ RRW+P  ++  V+   S
Sbjct: 36  RRRRWLSGDGDGGCPAVAAAVFRQRRWLPAMVVMVVIPAAS 76


>At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta
           catalytic subunit, putative (POLD1) similar to DNA
           polymerase delta [Glycine max] GI:2895198, OsPol delta
           large subunit [Oryza sativa (japonica cultivar-group)
           GI:9188570; contains Pfam profiles: PF03175 DNA
           polymerase type B, organellar and viral, PF00136 DNA
           polymerase family B, PF03104 DNA polymerase family B,
           exonuclease domain
          Length = 1081

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
 Frame = +3

Query: 165 ILKHIASIXTVDYPLL------RGRIRQ*GYLSTRVGSQEAYHQIFFVTRCYSFTVEVNR 326
           +++  A++   ++PLL      R R+R   + S + G +E+          +     ++R
Sbjct: 400 LIERAATLGIEEFPLLGRVKNSRVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHR 459

Query: 327 EHLLSTYFIRNIGTH-LRDLKTGA--SLHTNAPDVLSFRPRRLRVY 455
           +H LS+Y + ++  H L + K     S+ T+  +  +   RRL VY
Sbjct: 460 DHKLSSYSLNSVSAHFLSEQKEDVHHSIITDLQNGNAETRRRLAVY 505


>At2g05970.1 68415.m00648 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 466 YSVGYTRSRRGLKDKTSGAFVCSDAPVFKSRRWV-PIFLMKYVLNRCSRLTS 314
           Y   Y  +R  +   TSG  +   + V KS+RW+  I+ M Y+  R  R+ S
Sbjct: 246 YVKEYIDTRLNIALTTSGELLKVASVVQKSKRWLFRIYKMNYIKRRWERIES 297


>At4g33400.1 68417.m04747 dem protein-related / defective embryo and
           meristems protein-related identical to dem GI:2190419
           from [Lycopersicon esculentum]
          Length = 645

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 GSQEAYHQIFFVTRCYSFTVEVNREHLLSTYFIRN 359
           GS E YH    + +CY + + +  E ++ + F+ +
Sbjct: 582 GSHECYHDQEGLKKCYCYKIVLRNESIVDSRFMND 616


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,638,228
Number of Sequences: 28952
Number of extensions: 235932
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)