Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0754
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 42 9e-05
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 30 0.38
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 27 2.6
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 26 4.6
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 4.6
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 26 4.6
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 26 4.6
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 6.1
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 6.1
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 26 6.1
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 26 6.1
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 110 SVEDLHKFLDSFDHVLSDCDGVIWT-QDSLPRVGEFFKQMKKRGKTVNFV 256
S ++ +F+D FD L DCDGV+W+ +P V + K ++ GK + FV
Sbjct: 7 SPKEYKEFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFV 56
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 245 VNFVPITAFDPEQIMKLNSKQPASTTALRA*SFHLSQWQSTLNQLHS 385
+ V +TAF Q KLN+K+ +S F L W + +LH+
Sbjct: 431 IQMVALTAFHKLQNEKLNTKKESSAPLSLVTDFLLHSWPKSAERLHT 477
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 47 QKKSLKVLSIMGIESKHLLDLSVEDL 124
+K+S + + G+E + LLDLS E L
Sbjct: 16 KKRSFRTFAYRGVELEQLLDLSAEQL 41
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 185 QDSLPRVGEFFKQMKKRGKTVNFVPITAFDPEQIMKLNSKQP 310
++ + F K++ KTV FVP++ F + +++ + P
Sbjct: 166 EEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMP 207
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 501 VFRDDEEIGAVVFDSDFKINLPKMYRAITY 590
VF+ D E AVV DF+ P+ R TY
Sbjct: 99 VFKKDAEHEAVVVKRDFRPRRPEQTRPYTY 128
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 185 QDSLPRVGEFFKQMKKRGKTVNFVPITAFDPEQIMKLNSKQP 310
++ + F K++ KTV FVP++ F + +++ + P
Sbjct: 166 EEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMP 207
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +2
Query: 185 QDSLPRVGEFFKQMKKRGKTVNFVPITAFDPEQIMKLNSKQP 310
++ + F K++ KTV FVP++ F + +++ + P
Sbjct: 166 EEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMP 207
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 200 RVGEFFKQMKKRGKTVNFVPITAFDPEQIMKLNSKQPASTTALR 331
RVG+F K M + V I + DPE I + +K T L+
Sbjct: 298 RVGDFVKVMDNDEIPADIVIINSSDPEGICYIETKNLDGETNLK 341
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 35 YYSIQKKSLKVLSIMGIESKHLL 103
Y+SI KK ++L ++G+E+ LL
Sbjct: 1043 YFSIHKKLKQLLELVGVENASLL 1065
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 47 QKKSLKVLSIMGIESKHLLDLSVEDL 124
+K++ + + G+E + LLDLS E L
Sbjct: 17 KKRTFRTFAYRGVELEQLLDLSAEQL 42
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -1
Query: 180 HITPSQSERTWSKES--RNLCKSSTLKSNKCLDSIPIMLNTLRLFF 49
++ P S WS + C STL S L +P +N RLFF
Sbjct: 118 NVDPEISNALWSVLTWKNTSCSFSTLMSILALVYVPSWINLPRLFF 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,085
Number of Sequences: 5004
Number of extensions: 53928
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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